All Classes
AboutDialog
AbstractDerivedGraph
AbstractGraph
AbstractGraphFactory
AbstractHelpCanvasEventManager
AbstractParameterPanel
AbstractServiceGUI
AbstractStackDialogHandler
AbstractStateSet
AbstractTreeTableModel
ActivityLevel
AddEdgeAction
AddEdgeInGraphCanvasEventManager
AddNodeAction
AddNodeInGraphCanvasEventManager
AdjacencyList
AdjacencyMatrixWidget
Alias
AllSelector
AnchorSelector
AnimatorUI
Annotation
AnnotationLink
AnnotationPanel
ApproximateFinalPaths
AReg2GPConfig
AReg2GPModel
ArraySet
AttributesReader
AvaException
AvaMath
AvaMatrix
AvaOptions
AvaParameterEditionPanel
AvatarClause
AvatarConfigFrame
AvatarLogicalModelActionDialog
AvatarLogicalModelException
AvatarMDDSimulation
AvatarPanel
AvatarParameterList
AvatarParameters
AvatarParametersHelper
AvatarParametersManager
AvatarResults
AvatarService
AvatarServiceFacade
AvatarServiceGUI
AvatarSimulation
AvatarSimulation.AvatarStrategy
AvatarStateStore
AvatarUtils
BaseAction
BaseGraphGUI
BaseSimulationFrame
BaseSimulationUpdater
BaseSTGLayout
BaseStyle
BaseStyleOverride
BasicGraphAssociatedManager
BasicProgressListener
Bezier
BiblioList
BiblioManager
BiolayoutEncoder
BNetFormatService
BooleanEditor
BooleanFunctionTreeEditor
BooleanFunctionTreePanel
BooleanFunctionTreeRenderer
BooleanGene
BooleanParser
BooleanTreeNodeFactory
BoolNetFormatServiceGUI
BoolsimFormatService
BoolsimFormatServiceGUI
Button
ButtonPopup
CADPCommonWriter
CADPExportConfig
CADPExportConfigPanel
CADPExportService
CADPExportServiceGUI
CADPExpWriter
CADPIntegrationWriter
CADPMclWriter
CADPModuleWriter
CADPReadMeWriter
CADPSvlWriter
CADPWriter
CADPWriter.GateWriter
CADPWriter.StateVarWriter
CallDescription
CallMode
CanvasEventManager
CanvasGraphGUIImpl
CanvasHelpAction
CanvasRenderer
CascadingStyleSheet
CascadingStyleSheetManager
ChangeType
ChartGNUPlot
CircuitAlgo
CircuitAnalyser
CircuitConfigureSearch
CircuitDescr
CircuitDescrInTree
CircuitFrame
CircuitGUIStatus
CircuitSearcher
CircuitSearchStoreConfig
CircuitService
CircuitServiceGUI
CNetFormatService
CNetFormatServiceGUI
ColorableItem
ColoredCellRenderer
Colorizer
ColorizerPanel
ColorPalette
ColorProperty
ColumnDefinition
CompactStateSet
ComparedItemInfo
CompleteStatePanel
ComponentAdapter
CompositionConfig
CompositionConfigDialog
CompositionContext
CompositionContextImpl
CompositionPanel
CompositionService
CompositionServiceGUI
CompositionSpecificationDialog
ConfidenceInterval
ConnectivityServiceGUI
ConnectivityStyleProvider
ContextExtractor
ContextMergeOperator
CSSEdgeStyle
CSSNodeStyle
CSSStyle
CSSSyntaxException
CurrentOS
CycleGraph
CytoscapeEncoder
DatabaseInfo
DataViewer
DataViewerServiceGUI
DecisionAnalysis
DecisionAnalysisFrame
DecisionAnalysisServiceGUI
DecisionOnEdge
DefaultDialogSize
DefaultDynamicEdgeStyle
DefaultDynamicNodeStyle
DefaultHTGNodeStyle
DefaultRegulatoryEdgeStyle
DefaultRegulatoryNodeStyle
DefaultTableHeaderCellRenderer
DefaultTreeEdgeStyle
DefaultTreeNodeStyle
DeleteAction
DetailedErrorNotification
DetailedInformationNotification
DetailedNotification
DetailedWarningNotification
DeterministicSimulationUpdater
Dictionary
DocumentStyle
DocumentWriter
DocumentWriterFactory
Dotify
DragStatus
DropListener
DynamicAnalyserPathModel
DynamicAnalyserPathModel
DynamicAnalyserServiceGUI
DynamicEdge
DynamicGINMLWriter
DynamicGraph
DynamicGraphComparator
DynamicGraphFactory
DynamicGraphGUIHelper
DynamicGraphImpl
DynamicItemAttributePanel
DynamicItemCellRenderer
DynamicItemModel
DynamicLayout3D
DynamicLayoutMultidimention
DynamicNode
DynamicParser
DynamicPathItemCellRenderer
DynamicSearchPathConfig
Edge
EdgeAnchor
EdgeAttributeReaderImpl
EdgeAttributesReader
EdgeEnd
EdgePattern
EdgeRoutingPanel
EdgeStyle
EdgeStyleImpl
EdgeStyleOverride
EdgeViewInfo
EdgeViewInfoImpl
EditAction
EditActionManager
EditCallBack
EditMode
EditPanel
EditTab
ElementaryCyclesSearch
EnhancedJTable
EnhancedListCellRenderer
EnumAlgorithm
EnumProperty
ErrorNotification
EStatus
ExceptionNotification
ExhaustiveFinalPaths
ExportAction
FileCallBack
FileFormatDescription
FileFormatFilter
FileSelectionHelper
FinalPaths
FirefrontMDDSimulation
FirefrontPanel
FirefrontServiceFacade
FirefrontSimulation
FixedSizePanel
FormatSupportService
FormatSupportServiceGUI
Frame
FrameActionManager
FTableInteractionModel
FunctionalityCleanupOperator
FunctionalityContext
FunctionalityMergeOperator
FunctionEditorModel
FunctionPanel
FunctionPanelImpl
FunctionsCreator
GenericDocumentFormat
GenericGraphAction
GenericListListener
GenericPropertyEditorPanel
GenericPropertyHolder
GenericPropertyInfo
GenericSimulationUpdater
GenericTopology
GINMLFormatConfig
GINMLFormatConfigPanel
GINMLFormatService
GINMLFormatServiceGUI
GinmlHelper
GinmlParser
GINMLWriter
GINsimFormat
GINsimPlot
GlassPane
GNAFormatService
GNAFormatServiceGUI
Graph
GraphAssociatedObjectManager
GraphAssociation
GraphBackend
GraphCanvasRenderer
GraphChangeType
GraphComparator
GraphComparatorCaptionFrame
GraphComparatorFrame
GraphComparatorResult
GraphComparatorService
GraphComparatorServiceGUI
GraphComparatorStyleProvider
GraphEventCascade
GraphFactory
GraphGUI
GraphGUIHelper
GraphGUIHelperFactory
GraphGUIListener
GraphicalAttributesStore
GraphListener
GraphModel
GraphOptionPanel
GraphSelection
GraphSelectionCanvasEventManager
GraphStructureExportService
GraphStructureExportServiceGUI
GraphViewListener
GraphvizEncoder
GsButton
GsDragGestureListener
GsDragSourceListener
GsException
GsFileFilter
GSGraphManager
GsJGraphtBaseGraph
GsJTree
GsPanel
GSServiceGUIManager
GSServiceManager
GsTransferable
GsXMLHelper
GUIEditor
GUIFor
GUIHelper
GUIHelperManager
GUIInfo
GUIManager
GUIMessageUtils
HandledStackDialog
HashSetForSet
HelpCallBack
HelpedList
HelpedListEditorUI
HierarchicalCellRenderer
HierarchicalEdgeParameterPanel
HierarchicalGINMLWriter
HierarchicalGraphEditor
HierarchicalNode
HierarchicalNodeParameterPanel
HierarchicalNodeSet
HierarchicalSigmaSet
HierarchicalSigmaSetFactory
HierarchicalTableModel
HierarchicalTransitionGraph
HierarchicalTransitionGraphFactory
HierarchicalTransitionGraphGUIHelper
HierarchicalTransitionGraphImpl
HierarchicalTransitionGraphParser
HTGSimulation
HTGSimulationHelper
HTGSimulationQueueItem
HTGSimulationQueueSCC
HTGSimulationQueueState
HttpHelper
ImageExportService
ImageExportServiceGUI
ImageLoader
ImportAction
IncomingEdgeListModel
IndexableActionListener
InformationNotification
InitialStatePanel
InitialStatesGUIHelper
InitialStatesWidget
InitStateTableModel
InstanceSelectorWidget
IntegerProperty
IntegrationFunction
IntegrationFunction.IntegrationFunctionReification
IntegrationFunctionClause
IntegrationFunctionEvaluation
IntegrationFunctionMapping
IntegrationFunctionMDDFactory
IntegrationFunctionSpecification
IntegrationFunctionSpecification.IntegrationAtom
IntegrationFunctionSpecification.IntegrationConjunction
IntegrationFunctionSpecification.IntegrationDisjunction
IntegrationFunctionSpecification.IntegrationExpression
IntegrationFunctionSpecification.IntegrationNegation
IntegrationFunctionSpecification.IntegrationOperation
IntegrationFunctionVerification
IntegrationFunctionWidget
IntegrationGrammarLexer
IntegrationGrammarParser
IntegrationLogicalOperator
InteractionAnalysisAlgo
InteractionAnalysisAlgoResult
InteractionAnalysisFrame
InteractionAnalysisReport
InteractionAnalysisService
InteractionAnalysisServiceGUI
InteractionAnalysisStyleProvider
InteractionPanel
InteractionStatus
IntrospectionUtils
InvalidFunctionResolution
IOUtils
JgraphtBackendImpl
JSONDocumentationWriter
JTreeTable
Label
LaTeXDocumentWriter
Launcher
LayoutAction
LayoutAlgo
LayoutService
LayoutServiceGUI
LevelLayout
LimitedSimulation
LimitedSimulationFrame
LimitedSimulationService
LimitedSimulationServiceGUI
ListEditionPanel
ListenableNamedList
ListOfPerturbations
ListOfReductionConfigs
ListOfSimulationParametersHelper
ListPanel
ListPanelCompanion
ListPanelHelper
ListReorderListener
ListSelectionPanel
ListTools
LocalGraph
LocalGraphCategory
LocalGraphConfig
LocalGraphFrame
LocalGraphService
LocalGraphServiceGUI
LocalGraphStyleProvider
LogicalFunctionList
LogicalFunctionListElement
LogicalFunctionPanel
LogicalFunctionTreePanel
LogicalFunctionView
LogicalModel2RegulatoryGraph
LogicalModelActionDialog
LogicalParameter
LogicalParameterList
LogicalTruthTableFormatService
LogManager
LRGCustomStyleProvider
LRGDocumentationAction
LRGDocumentationService
LRGDocumentationServiceGUI
LRGDocumentationWriter
LRGPatternStyleProvider
LRGStateStyleProvider
LRMInitialStateModel
MaBoSSExportService
MaBoSSExportServiceGUI
MainEditTab
MainFrame
MainFrameActionManager
MaskUtils
MaxSpinModel
MDDContext
MDDStateSet
MDDUtils
MinMaxEditor
MinMaxSpinModel
MinSpinModel
MiriamURNHelper
MixedTableHeader
ModelBooleanizerService
ModelBooleanizerServiceGUI
ModelReductionService
ModelReversionService
ModelReversionServiceGUI
MonteCarloPanel
MonteCarloServiceFacade
MonteCarloSimulation
MotionAdapter
MovingEdgeType
MultiActionListener
MultidimensionLayoutGUI
MultiEdgeEditPanel
MyBasicTransferable
NamedList
NamedObject
NamedState
NamedStateList
NamedStatesHandler
NamedStatesIterator
NamedStatesManager
NamedStateStore
NaturalOrderComparator
NodeAttributeReaderImpl
NodeAttributesReader
NodeBorder
NodeInfoSorter
NodeMaxValueSpinModel
NodeOrderer
NodeReducedData
NodeShape
NodeStyle
NodeStyleImpl
NodeStyleOverride
NodeViewInfo
Notification
NotificationDetailFrame
NotificationListener
NotificationManager
NotificationPanel
NotificationResolution
NotificationSource
NotificationType
NuSMVConfig
NuSMVEncoder
NuSMVExportConfigPanel
NuSMVExportService
NuSMVExportServiceGUI
ObjectAssociationManager
ObjectEditor
ObjectPropertyEditorUI
ObjectStore
OmddVizFrame
OmddVizServiceGUI
OOoDocumentWriter
OpenHelper
OpenUtils
OptionStore
OSXAdapter
OutgoingNodesHandlingStrategy
PanelFactory
ParamPanel
ParamTree
ParamTreeLeaf
ParamTreeLeafPattern
ParamTreeLeafValue
ParamTreeNode
ParsingWarning
ParsingWarningReport
PathFinding
PathFindingFrame
PathFindingServiceGUI
PathFindingTableModel
PathStyleProvider
PatternHolder
PatternSelectionPanel
Perturbation
PerturbationCreatePanel
PerturbationFixed
PerturbationGUIHelper
PerturbationHolder
PerturbationListener
PerturbationManager
PerturbationMultiple
PerturbationPanel
PerturbationPanelListHelper
PerturbationParser
PerturbationRange
PerturbationRegulator
PerturbationSelectionPanel
PerturbationStore
PerturbationType
PerturbationUser
PetriNetAPNNFormatService
PetriNetExportAction
PetriNetExportServiceGUI
PetriNetINAFormatService
PetriNetPNMLFormatService
PNGraph
PNtoGraph
PolytopesSelector
PolytopesService
PolytopesVizFrame
PolytopesVizServiceGUI
PriorityClass
PriorityClassContentEditor
PriorityDefinitionHelper
PriorityDefinitionPanel
PriorityManagerHelper
PrioritySelectionPanel
PrioritySetAddMode
PrioritySetDefinition
PrioritySetList
PRISMConfig
PRISMEncoder
PRISMExportConfigPanel
PRISMExportService
PRISMExportServiceGUI
ProgressListener
PropertyActionButton
PropertySwitch
RangeSlider
Reachable
ReconstructionTask
ReducedGINMLWriter
ReducedGraph
ReducedGraphFactory
ReducedGraphGUIHelper
ReducedGraphImpl
ReducedGraphParser
ReducedGraphTableModel
ReducedParameterPanel
ReductionConfig
ReductionConfigDialog
ReductionConfigManager
ReductionConfigSelectionPanel
ReductionConfigurationPanel
ReductionGUIHelper
ReductionHolder
ReductionLauncher
ReductionSelectionPanel
ReductionServiceGUI
ReductionStub
ReductionTask
Reg2DynService
Reg2DynServiceGUI
RegGraphEncoder
RegGraphExportService
RegGraphExportServiceGUI
RegulatoryAnimator
RegulatoryEdge
RegulatoryEdgeEditor
RegulatoryEdgeSign
RegulatoryFunctionTreeServiceGUI
RegulatoryGINMLWriter
RegulatoryGraph
RegulatoryGraphAnimationServiceGUI
RegulatoryGraphComparator
RegulatoryGraphEditor
RegulatoryGraphFactory
RegulatoryGraphGUIHelper
RegulatoryGraphImpl
RegulatoryGraphOptionPanel
RegulatoryIntegration
RegulatoryMultiEdge
RegulatoryNode
RegulatoryNodeEditor
RegulatoryParser
RemovedInfo
ResolvableErrorNotification
ResolvableNotification
ResolvableWarningNotification
Result
ResultHandler
ResultsDialog
RewiringAction
RingLayout
RootPanel
SATConfig
SATEncoder
SATExportConfigPanel
SATExportService
SATExportServiceGUI
SATExportType
SavingGUI
SBMLQualConfig
SBMLQualExportConfigPanel
SBMLqualService
SBMLqualServiceGUI
SCCGraphAlgo
SCCGraphService
SCCResult
ScriptLauncher
SearchFrame
SelectionCallBack
SelectionType
Selector
SeparatorComboBox
Service
ServiceClassInfo
ServiceGUI
ServiceStatus
ShowNonEditableStringCellRenderer
SimpleCanvas
SimpleDialog
SimpleDimension
SimpleServiceGUI
SimpleStateListTableModel
SimpleStroke
Simulation
Simulation
SimulationConstraint
SimulationHelper
SimulationPanel
SimulationParameter
SimulationParameterEditionPanel
SimulationParameterList
SimulationParameters
SimulationParametersGUIHelper
SimulationParametersManager
SimulationParametersParser
SimulationQueuedState
SimulationService
SimulationUpdater
SimulationUtils
SingleSimulationFrame
SpinEditor
SpinModel
SplitPane
StableRegionsService
StableRegionsServiceGUI
StableStatesService
StableStatesServiceGUI
StableStateSwingUI
StableTableModel
StackDialog
StackDialogHandler
StandaloneGUI
StartupDialog
State
StateActionPanel
StatefulLogicalModel
StatefulLogicalModelImpl
StateInRegGraphFrame
StateInRegulatoryGraphServiceGUI
StateListPanel
StateProbComparator
StateSet
StateSetComparator
StatesSet
StatesToHierarchicalEditTab
StatesToHierarchicalMappingManager
StateTableModel
StateTransitionGraphEditor
StatusTextField
STGLimitedSimulationHelper
STGPathStyleProvider
STGSimulation
STGSimulationHelper
StockButton
StrongConnectedComponents
StronglyConnectedComponentTask
Style
StyleColorizerCheckbox
StyleEditionPanel
StyleEditor
StyleManager
StyleProperty
StyleProvider
StyleTab
SVGEllipse
SVGEncoder
SVGPolygon
SVGRectangle
SVGShape
SVGWriter
SynchronousSimulationUpdater
TableActionListener
TableHeaderTransferHandler
TableInteractionsModel
TAndOperator
TargetEdgesIterator
TarjanSimulation
TBinaryOperator
TBooleanData
TBooleanOperand
TBooleanOperator
TBooleanParser
TBooleanTreeNode
TBooleanTreeNodeFactory
TempDir
TestCycles
TextProperty
Timeout
TimeoutObject
Timer
Timing
TitleToolTipPanel
TNotOperator
ToolAction
ToolkitAction
ToolTipsable
Topology
TOrOperator
TransitionGraph
TransitionGraphImpl
TrapSpaceInclusion
TrapSpaceInclusionDiagram
TrapSpaceNode
TrapSpaceServiceGUI
TrapSpaceServiceWrapper
TrapSpaceSwingUI
TrapSpaceTableModel
TrapSpaceTreeFactory
TrapSpaceTreeGUIHelper
TrapSpaceTreeImpl
TrapSpaceTreeMainPanel
Tree
TreeActionPanel
TreeBuilder
TreeBuilderFromCircuit
TreeBuilderFromManualOmdd
TreeBuilderFromMDD
TreeBuilderFromRegulatoryGraph
TreeEdge
TreeElement
TreeExpression
TreeFactory
TreeGUIHelper
TreeImpl
TreeInteractionsModel
TreeMenu
TreeNode
TreeParam
TreeString
TreeTableModel
TreeTableModelAdapter
TreeValue
TruthTableFormatService
TruthTableFormatServiceGUI
TUnaryOperator
Txt
UpdaterDefinition
UpdaterDefinitionAsynchronous
UpdaterDefinitionComplete
UpdaterDefinitionSequential
UpdaterDefinitionStore
UpdaterDefinitionSynchronous
UpdatingPanel
UserSupporter
ValueList
ValueListComboModel
ValuePanel
VerticalLabelUI
VerticalTableHeaderCellRenderer
ViewCopyHelper
ViewHelper
VirtualScrollable
VirtualScrollPane
VisibleComponentsWidget
WarningNotification
WhatToDoWithGraph
WikiDocumentWriter
XHTMLDocumentWriter
XMLHelper
XMLize
XMLWriter
ZoomEffect