org.colomoto.biolqm.io.avatar

Class AvatarUtils

java.lang.Object

org.colomoto.biolqm.io.avatar.AvatarUtils

public final class AvatarUtils
extends Object

Facilities for the management of logical models for simulations

Author:

Rui Henriques, Pedro T. Monteiro

Field Summary

Fields

Modifier and Type	Field and Description
static int	DEC_PLACES

Constructor Summary

Constructors

Constructor and Description
AvatarUtils()

Method Summary

Modifier and Type	Method and Description
static int[]	getChildrenWithSingleNode(int nstates, int node) Creates a state where only a single component is initialized (others as -1)
static int[]	getFreeChildren(int nstates) Creates a state (int array) where components are initialized as -1
static byte[]	getFreeState(int ncomponents) Creates a state (byte array) where components are initialized as -1
static int[]	getIdentityChildren(int nstates) Creates an identity node array (e.g.
static double	round(double value)
static double	round(double value, int decimalPlaces)
static int[]	toArray(List<Integer> list) Converts a list of integers to an array
static byte[]	toByteArray(int[] vector) Converts an integer array to a byte array
static String	toOpenString(byte[] vector)
static String	toString(BigInteger[] vector) BigInteger array to string
static String	toString(boolean[] vector) Boolean array to string
static String	toString(byte[] vector) Byte array to string
static String	toString(double[] vector) Double array to string
static String	toString(double[][] matrix) Double matrix to string
static String	toString(int[] vector) Integer array to string
static String	toString(int[][] matrix) Integer matrix to string
static String	toString(List<byte[]> list) List of states to string
static String	toString(long[] vector) Long array to string
static String	toString(String[] vector) String array to string

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

DEC_PLACES

public static final int DEC_PLACES

See Also:

Constant Field Values

Constructor Detail

AvatarUtils

public AvatarUtils()

Method Detail

getFreeChildren

public static int[] getFreeChildren(int nstates)

Creates a state (int array) where components are initialized as -1

Parameters:

nstates - the number of components

Returns:

the free state (int array with components initialized with -1)

getFreeState

public static byte[] getFreeState(int ncomponents)

Creates a state (byte array) where components are initialized as -1

Parameters:

ncomponents - the number of components

Returns:

the free state (byte array with components initialized with -1)

getIdentityChildren

public static int[] getIdentityChildren(int nstates)

Creates an identity node array (e.g. [0,1,2,3..,n])

Parameters:

nstates - the number of components

Returns:

the identity node array

getChildrenWithSingleNode

public static int[] getChildrenWithSingleNode(int nstates,
                                              int node)

Creates a state where only a single component is initialized (others as -1)

Parameters:

nstates - number of components

node - the component to be initialized

Returns:

the array with the initialize 'node' component (e.g. [-1,-1,..,-1,p,-1,..-1]=

toString

public static String toString(List<byte[]> list)

List of states to string

Parameters:

list - the list of states (byte arrays)

Returns:

a string representing a list of states

toString

public static String toString(byte[] vector)

Byte array to string

Parameters:

vector - the byte array

Returns:

textual representation of the byte array

toOpenString

public static String toOpenString(byte[] vector)

toString

public static String toString(int[] vector)

Integer array to string

Parameters:

vector - the integer array

Returns:

textual representation of the integer array

toString

public static String toString(long[] vector)

Long array to string

Parameters:

vector - the long array

Returns:

textual representation of the long array

toString

public static String toString(BigInteger[] vector)

BigInteger array to string

Parameters:

vector - the BigInteger array

Returns:

textual representation of the BigInteger array

toString

public static String toString(double[] vector)

Double array to string

Parameters:

vector - the double array

Returns:

textual representation of the double array

toString

public static String toString(String[] vector)

String array to string

Parameters:

vector - the String array

Returns:

textual representation of the String array

toString

public static String toString(boolean[] vector)

Boolean array to string

Parameters:

vector - the Boolean array

Returns:

textual representation of the Boolean array

toString

public static String toString(int[][] matrix)

Integer matrix to string

Parameters:

matrix - the matrix of integers

Returns:

textual representation of the matrix of integers

toString

public static String toString(double[][] matrix)

Double matrix to string

Parameters:

matrix - the matrix of doubles

Returns:

textual representation of the matrix of doubles

toArray

public static int[] toArray(List<Integer> list)

Converts a list of integers to an array

Parameters:

list - the list of integers

Returns:

the converted array of integers

toByteArray

public static byte[] toByteArray(int[] vector)

Converts an integer array to a byte array

Parameters:

vector - the integer array

Returns:

the casted byte array

round

public static double round(double value,
                           int decimalPlaces)

round

public static double round(double value)