org.ginsim.core.service

Class FormatSupportService<F extends org.colomoto.biolqm.io.LogicalModelFormat>

java.lang.Object

org.ginsim.core.service.FormatSupportService<F>

All Implemented Interfaces:

Service

Direct Known Subclasses:

BNetFormatService, BoolsimFormatService, CNetFormatService, GINMLFormatService, GNAFormatService, LogicalTruthTableFormatService, MaBoSSExportService, PetriNetAPNNFormatService, PetriNetINAFormatService, PetriNetPNMLFormatService, SBMLqualService, TruthTableFormatService

public class FormatSupportService<F extends org.colomoto.biolqm.io.LogicalModelFormat>
extends Object
implements Service

Generic service to support format implemented in LogicalModel. This provides an easy way to use the core capabilities provides by LogicalModel formats. A static method allows to add automatic wrappers for all available formats.

Author:

Aurelien Naldi

Field Summary

Fields

Modifier and Type	Field and Description
F	format

Constructor Summary

Constructors

Constructor and Description
FormatSupportService(F format)

Method Summary

Modifier and Type	Method and Description
static void	addMissingFormats() Trigger the creation of automatic wrappers for all available formats.
static void	blacklistFormat(org.colomoto.biolqm.io.LogicalModelFormat f) Blacklist a format to prevent the creation of an automatic wrapper for it.
boolean	canExport()
boolean	canExportModel(RegulatoryGraph graph)
boolean	canImport()
String	export(org.colomoto.biolqm.LogicalModel model, org.colomoto.biolqm.io.StreamProvider out)
String	export(org.colomoto.biolqm.LogicalModel model, String filename)
String	export(RegulatoryGraph graph, String filename)
org.colomoto.biolqm.LogicalModel	importFile(File f)
org.colomoto.biolqm.LogicalModel	importFile(String filename)
RegulatoryGraph	importLRG(String filename)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

format

public final F extends org.colomoto.biolqm.io.LogicalModelFormat format

Constructor Detail

FormatSupportService

public FormatSupportService(F format)

Method Detail

blacklistFormat

public static void blacklistFormat(org.colomoto.biolqm.io.LogicalModelFormat f)

Blacklist a format to prevent the creation of an automatic wrapper for it.

Parameters:

f -

addMissingFormats

public static void addMissingFormats()

Trigger the creation of automatic wrappers for all available formats. Formats that have a custom service or have been blacklisted will be skipped.

export

public String export(RegulatoryGraph graph,
                     String filename)
              throws Exception

Throws:

Exception

export

public String export(org.colomoto.biolqm.LogicalModel model,
                     String filename)
              throws Exception

Throws:

Exception

export

public String export(org.colomoto.biolqm.LogicalModel model,
                     org.colomoto.biolqm.io.StreamProvider out)
              throws Exception

Throws:

Exception

importFile

public org.colomoto.biolqm.LogicalModel importFile(File f)
                                            throws Exception

Throws:

Exception

importFile

public org.colomoto.biolqm.LogicalModel importFile(String filename)
                                            throws Exception

Throws:

Exception

importLRG

public RegulatoryGraph importLRG(String filename)
                          throws Exception

Throws:

Exception

canExport

public boolean canExport()

canImport

public boolean canImport()

canExportModel

public boolean canExportModel(RegulatoryGraph graph)