org.ginsim.service.tool.composition

Class CompositionService

java.lang.Object

org.ginsim.service.tool.composition.CompositionService

All Implemented Interfaces:

Service

@MetaInfServices(value=Service.class)
 @Alias(value="composition")
 @ServiceStatus(value=RELEASED)
public class CompositionService
extends Object
implements Service

Module composition service

Author:

Nuno D. Mendes

Constructor Summary

Constructors

Constructor and Description
CompositionService()

Method Summary

Modifier and Type	Method and Description
protected RegulatoryGraph	computeComposedGraph(RegulatoryGraph graph, CompositionConfig config)
RegulatoryGraph	run(RegulatoryGraph graph, CompositionConfig config) Run the Composition by replicating a Regulatory graph, according to a Topology and an IntegrationFunctionMapping and return the composed graph after invoking the necessary reduction operations

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CompositionService

public CompositionService()

Method Detail

run

public RegulatoryGraph run(RegulatoryGraph graph,
                           CompositionConfig config)
                    throws Exception

Run the Composition by replicating a Regulatory graph, according to a Topology and an IntegrationFunctionMapping and return the composed graph after invoking the necessary reduction operations

Parameters:

graph - the current RegulatoryGraph

topology - the composition Topology, indicating the neighbourhood relationships

mapping - the integration functions to apply to each mapped input

Returns:

RegulatoryGraph

Throws:

GsException

Exception

computeComposedGraph

protected RegulatoryGraph computeComposedGraph(RegulatoryGraph graph,
                                               CompositionConfig config)
                                        throws Exception

Throws:

Exception