org.ginsim.service.tool.reg2dyn

Class SimulationParameterList

java.lang.Object

java.util.AbstractCollection<E>

java.util.AbstractList<E>

java.util.ArrayList<T>

org.ginsim.core.utils.data.NamedList<SimulationParameters>

org.ginsim.service.tool.reg2dyn.SimulationParameterList

All Implemented Interfaces:

Serializable, Cloneable, Iterable<SimulationParameters>, Collection<SimulationParameters>, List<SimulationParameters>, RandomAccess, GraphListener<RegulatoryGraph>, GenericListListener

public class SimulationParameterList
extends NamedList<SimulationParameters>
implements GraphListener<RegulatoryGraph>, GenericListListener

store all simulation parameters and offer a mean to access them. Also deals with updating them when the graph is changed

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
RegulatoryGraph	graph
NamedStatesHandler	imanager
PrioritySetList	pcmanager

Fields inherited from class java.util.AbstractList

modCount

Constructor Summary

Constructors

Constructor and Description
SimulationParameterList(Graph graph)
SimulationParameterList(Graph<RegulatoryNode,RegulatoryMultiEdge> graph, SimulationParameters param)

Method Summary

Modifier and Type	Method and Description
SimulationParameters	add()
int	add(SimulationParameters param, int index)
void	contentChanged()
Perturbation	getPerturbation(SimulationParameters param)
GraphEventCascade	graphChanged(RegulatoryGraph g, GraphChangeType type, Object data)
void	itemAdded(Object item, int pos)
void	itemRemoved(Object item, int pos)
void	list_item_removed(SimulationParameters param)
void	structureChanged()

Methods inherited from class org.ginsim.core.utils.data.NamedList

findUniqueName, getByName, isNameValid, rename

Methods inherited from class java.util.ArrayList

add, add, addAll, addAll, clear, clone, contains, ensureCapacity, forEach, get, indexOf, isEmpty, iterator, lastIndexOf, listIterator, listIterator, remove, remove, removeAll, removeIf, removeRange, replaceAll, retainAll, set, size, sort, spliterator, subList, toArray, toArray, trimToSize

Methods inherited from class java.util.AbstractList

equals, hashCode

Methods inherited from class java.util.AbstractCollection

containsAll, toString

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.util.List

containsAll, equals, hashCode

Methods inherited from interface java.util.Collection

parallelStream, stream

Field Detail

graph

public final RegulatoryGraph graph

imanager

public final NamedStatesHandler imanager

pcmanager

public final PrioritySetList pcmanager

Constructor Detail

SimulationParameterList

public SimulationParameterList(Graph graph)

Parameters:

graph -

SimulationParameterList

public SimulationParameterList(Graph<RegulatoryNode,RegulatoryMultiEdge> graph,
                               SimulationParameters param)

Method Detail

graphChanged

public GraphEventCascade graphChanged(RegulatoryGraph g,
                                      GraphChangeType type,
                                      Object data)

Specified by:

graphChanged in interface GraphListener<RegulatoryGraph>

add

public int add(SimulationParameters param,
               int index)

add

public SimulationParameters add()

itemAdded

public void itemAdded(Object item,
                      int pos)

Specified by:

itemAdded in interface GenericListListener

itemRemoved

public void itemRemoved(Object item,
                        int pos)

Specified by:

itemRemoved in interface GenericListListener

contentChanged

public void contentChanged()

Specified by:

contentChanged in interface GenericListListener

structureChanged

public void structureChanged()

Specified by:

structureChanged in interface GenericListListener

list_item_removed

public void list_item_removed(SimulationParameters param)

getPerturbation

public Perturbation getPerturbation(SimulationParameters param)