org.ginsim.service.tool.avatar.params

Class AvatarStateStore

java.lang.Object

org.ginsim.service.tool.avatar.params.AvatarStateStore

All Implemented Interfaces:

NamedStateStore

public class AvatarStateStore
extends Object
implements NamedStateStore

List of named states that maintains the initial states and oracles for a given simulation

Version:

1.0

Author:

Rui Henriques

Field Summary

Fields

Modifier and Type	Field and Description
List<RegulatoryNode>	allnodes
List<RegulatoryNode>	inodes
NamedStateList	instates list of named states associated with input components
List<RegulatoryNode>	nodes
NamedStateList	nstates list of named states associated with non-input components
NamedStateList	oracles list of named states associated with oracles

Constructor Summary

Constructors

Constructor and Description
AvatarStateStore(List<byte[]> initialstates, List<byte[]> initialIStates, List<byte[]> _oracles, RegulatoryGraph graph) Creates a named state store given a set of states from common and input components and the current graph
AvatarStateStore(List<byte[]> initialstates, RegulatoryGraph graph) Creates a named state store given a set of states and the current graph
AvatarStateStore(List<byte[]> states, String[] namestates, List<byte[]> istates, String[] inamestates, List<byte[]> _oracles, String[] onames, RegulatoryGraph graph) Creates a named state store given a set of states, their names and the current graph
AvatarStateStore(List<RegulatoryNode> _nodes, List<RegulatoryNode> _inodes, List<RegulatoryNode> _allnodes, NamedStateList _states, NamedStateList _istates, NamedStateList _oracles) Creates a named state store based on node info and the list of named states for common and input components
AvatarStateStore(RegulatoryGraph graph)

Method Summary

Modifier and Type	Method and Description
void	addOracle(Map<String,List<byte[]>> oracle) Adds an oracle as a set of named state-patterns
void	addOracle(NamedStateList _oracles)
void	addStateList(NamedStateList states, NamedStateList istates, NamedStateList _oracles) Adds a list of named states of common and input components
AvatarStateStore	clone()
Map	getInitialState()
Map	getInputState()
List<String>	getNames(boolean input) Gathers all the names of the stored states
List<String>	getOracleNames()
Map	getOracleState()

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

nstates

public NamedStateList nstates

list of named states associated with non-input components

instates

public NamedStateList instates

list of named states associated with input components

oracles

public NamedStateList oracles

list of named states associated with oracles

nodes

public List<RegulatoryNode> nodes

inodes

public List<RegulatoryNode> inodes

allnodes

public List<RegulatoryNode> allnodes

Constructor Detail

AvatarStateStore

public AvatarStateStore(List<byte[]> initialstates,
                        RegulatoryGraph graph)

Creates a named state store given a set of states and the current graph

Parameters:

initialstates - the states to be stored (including input and non-input components)

graph - the regulatory graph

AvatarStateStore

public AvatarStateStore(RegulatoryGraph graph)

AvatarStateStore

public AvatarStateStore(List<byte[]> initialstates,
                        List<byte[]> initialIStates,
                        List<byte[]> _oracles,
                        RegulatoryGraph graph)

Creates a named state store given a set of states from common and input components and the current graph

Parameters:

initialstates - list with the states of non-input components

initialIStates - list with the states of input components

graph - the regulatory graph

AvatarStateStore

public AvatarStateStore(List<byte[]> states,
                        String[] namestates,
                        List<byte[]> istates,
                        String[] inamestates,
                        List<byte[]> _oracles,
                        String[] onames,
                        RegulatoryGraph graph)

Creates a named state store given a set of states, their names and the current graph

Parameters:

states - list with the states of non-input components

namestates - list with the names of the previous states

istates - list with the states of input components

inamestates - list with the names of the previous states

graph - the regulatory graph

AvatarStateStore

public AvatarStateStore(List<RegulatoryNode> _nodes,
                        List<RegulatoryNode> _inodes,
                        List<RegulatoryNode> _allnodes,
                        NamedStateList _states,
                        NamedStateList _istates,
                        NamedStateList _oracles)

Creates a named state store based on node info and the list of named states for common and input components

Parameters:

_nodes - ordered set with non-input components

_inodes - ordered set with input components

_allnodes - ordered set with all components

_states - the list of named states of non-input components

_istates - the list of named states of input components

_oracles -

Method Detail

clone

public AvatarStateStore clone()

Overrides:

clone in class Object

addOracle

public void addOracle(Map<String,List<byte[]>> oracle)

Adds an oracle as a set of named state-patterns

Parameters:

oracle - the list of named oracles as a map (name and the corresponding set of state-patterns)

addStateList

public void addStateList(NamedStateList states,
                         NamedStateList istates,
                         NamedStateList _oracles)

Adds a list of named states of common and input components

Parameters:

states - the list of named states associated with non-input components

istates - the list of named states associated with input components

_oracles -

addOracle

public void addOracle(NamedStateList _oracles)

getInitialState

public Map getInitialState()

Specified by:

getInitialState in interface NamedStateStore

getInputState

public Map getInputState()

Specified by:

getInputState in interface NamedStateStore

getOracleState

public Map getOracleState()

getNames

public List<String> getNames(boolean input)

Gathers all the names of the stored states

Parameters:

input - true if the names of states associated with input components is to return (false otherwise)

Returns:

a list with the names with the stored states

getOracleNames

public List<String> getOracleNames()