org.ginsim.service.tool.stablestates

Class StableStatesService

java.lang.Object

org.ginsim.service.tool.stablestates.StableStatesService

All Implemented Interfaces:

Service

@MetaInfServices(value=Service.class)
 @Alias(value="stable")
 @ServiceStatus(value=RELEASED)
public class StableStatesService
extends Object
implements Service

This service provides an analytic search for stable states, implemented in bioLQM. A state "x" is stable if, for every gene "i", K(x) = x(i).

Author:

Aurelien Naldi

Field Summary

Fields

Modifier and Type	Field and Description
static org.colomoto.biolqm.tool.fixpoints.FixpointService	BACKEND

Constructor Summary

Constructors

Constructor and Description
StableStatesService() This constructor should be called by the service manager, other users will have to get the first instance

Method Summary

Modifier and Type	Method and Description
org.colomoto.biolqm.tool.fixpoints.FixpointSearcher	getSearcher(org.colomoto.biolqm.LogicalModel model) Deprecated. This low-level API could change or be removed
org.colomoto.biolqm.tool.fixpoints.FixpointSearcher	getSearcher(RegulatoryGraph graph) Deprecated. This low-level API could change or be removed
static org.colomoto.biolqm.tool.fixpoints.FixpointTask	getTask(org.colomoto.biolqm.LogicalModel model)
org.colomoto.biolqm.tool.fixpoints.FixpointTask	getTask(RegulatoryGraph graph)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

BACKEND

public static final org.colomoto.biolqm.tool.fixpoints.FixpointService BACKEND

Constructor Detail

StableStatesService

public StableStatesService()

This constructor should be called by the service manager, other users will have to get the first instance

Method Detail

getTask

public static org.colomoto.biolqm.tool.fixpoints.FixpointTask getTask(org.colomoto.biolqm.LogicalModel model)

getTask

public org.colomoto.biolqm.tool.fixpoints.FixpointTask getTask(RegulatoryGraph graph)

getSearcher

public org.colomoto.biolqm.tool.fixpoints.FixpointSearcher getSearcher(org.colomoto.biolqm.LogicalModel model)

Deprecated. This low-level API could change or be removed

Parameters:

model -

Returns:

a MDD-based stable-state searcher

getSearcher

public org.colomoto.biolqm.tool.fixpoints.FixpointSearcher getSearcher(RegulatoryGraph graph)

Deprecated. This low-level API could change or be removed

Parameters:

graph -

Returns:

a MDD-based stable-state searcher