org.ginsim.service.tool.circuit

Class CircuitAnalyser

java.lang.Object

java.lang.Thread

org.colomoto.common.task.AbstractTask<List<CircuitDescrInTree>>

org.ginsim.service.tool.circuit.CircuitAnalyser

All Implemented Interfaces:

Runnable, Callable<List<CircuitDescrInTree>>, org.colomoto.common.task.Task<List<CircuitDescrInTree>>

public class CircuitAnalyser
extends org.colomoto.common.task.AbstractTask<List<CircuitDescrInTree>>

A Task for circuit analysis: returns a list of circuits with functionality contexts.

Author:

Aurelien Naldi

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

Thread.State, Thread.UncaughtExceptionHandler

Field Summary

Fields inherited from class org.colomoto.common.task.AbstractTask

canceled

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors

Constructor and Description
CircuitAnalyser(RegulatoryGraph graph, Perturbation perturbation, boolean do_cleanup)
CircuitAnalyser(RegulatoryGraph graph, Perturbation perturbation, boolean do_cleanup, List<CircuitDescrInTree> circuits)

Method Summary

Modifier and Type	Method and Description
org.colomoto.mddlib.MDDManager	getManager()
protected List<CircuitDescrInTree>	performTask()

Methods inherited from class org.colomoto.common.task.AbstractTask

background, call, cancel, getResult, getStatus, run

Methods inherited from class java.lang.Thread

activeCount, checkAccess, clone, countStackFrames, currentThread, destroy, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, stop, suspend, toString, yield

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.colomoto.common.task.Task

setParameter, setParameters, setParameters

Constructor Detail

CircuitAnalyser

public CircuitAnalyser(RegulatoryGraph graph,
                       Perturbation perturbation,
                       boolean do_cleanup)

CircuitAnalyser

public CircuitAnalyser(RegulatoryGraph graph,
                       Perturbation perturbation,
                       boolean do_cleanup,
                       List<CircuitDescrInTree> circuits)

Method Detail

performTask

protected List<CircuitDescrInTree> performTask()
                                        throws Exception

Specified by:

performTask in class org.colomoto.common.task.AbstractTask<List<CircuitDescrInTree>>

Throws:

Exception

getManager

public org.colomoto.mddlib.MDDManager getManager()