org.ginsim.core.graph.regulatorygraph.perturbation

Class PerturbationMultiple

java.lang.Object

org.colomoto.biolqm.modifier.perturbation.MultiplePerturbation<Perturbation>

org.ginsim.core.graph.regulatorygraph.perturbation.PerturbationMultiple

All Implemented Interfaces:

org.colomoto.biolqm.modifier.perturbation.LogicalModelPerturbation, Perturbation

public class PerturbationMultiple
extends org.colomoto.biolqm.modifier.perturbation.MultiplePerturbation<Perturbation>
implements Perturbation

Field Summary

Fields inherited from class org.colomoto.biolqm.modifier.perturbation.MultiplePerturbation

perturbations

Constructor Summary

Constructors

Constructor and Description
PerturbationMultiple(List<Perturbation> perturbations) Create a multiple perturbation

Method Summary

Modifier and Type	Method and Description
Perturbation	clone(ListOfPerturbations manager, Map<org.colomoto.biolqm.NodeInfo,org.colomoto.biolqm.NodeInfo> m_nodes, Map<Perturbation,Perturbation> m_perturbations) Copy the perturbation to a new graph (in particular to a reduced version of the current graph)
String	getDescription() Get a human-readable description of the perturbation
void	toXML(XMLWriter out) Save the perturbation definition to XML (to save in zginml)

Methods inherited from class org.colomoto.biolqm.modifier.perturbation.MultiplePerturbation

affectsNode, equals, getStringRepresentation, restrictValues, toString, update

Methods inherited from class java.lang.Object

clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.colomoto.biolqm.modifier.perturbation.LogicalModelPerturbation

affectsNode, apply, getStringRepresentation, restrictValues, update

Constructor Detail

PerturbationMultiple

public PerturbationMultiple(List<Perturbation> perturbations)

Create a multiple perturbation

Parameters:

perturbations - list of perturbations to apply.

Method Detail

toXML

public void toXML(XMLWriter out)
           throws IOException

Description copied from interface: Perturbation

Save the perturbation definition to XML (to save in zginml)

Specified by:

toXML in interface Perturbation

Throws:

IOException

clone

public Perturbation clone(ListOfPerturbations manager,
                          Map<org.colomoto.biolqm.NodeInfo,org.colomoto.biolqm.NodeInfo> m_nodes,
                          Map<Perturbation,Perturbation> m_perturbations)

Description copied from interface: Perturbation

Copy the perturbation to a new graph (in particular to a reduced version of the current graph)

Specified by:

clone in interface Perturbation

Returns:

getDescription

public String getDescription()

Description copied from interface: Perturbation

Get a human-readable description of the perturbation

Specified by:

getDescription in interface Perturbation

Returns:

a string describing the changes