org.ginsim.service.tool.reg2dyn

Class SimulationParameters

java.lang.Object

org.ginsim.service.tool.reg2dyn.SimulationParameters

All Implemented Interfaces:

XMLize, NamedStateStore, NamedObject, UpdaterDefinitionStore

public class SimulationParameters
extends Object
implements XMLize, NamedObject, NamedStateStore, UpdaterDefinitionStore

remember, save and restore a simulation parameter.

Field Summary

Fields

Modifier and Type	Field and Description
boolean	breadthFirst
Map	m_initState
Map	m_input
int	maxdepth
int	maxnodes
String	name
SimulationParameterList	param_list
int	simulationStrategy
static int	STRATEGY_HTG
static int	STRATEGY_SCCG
static int	STRATEGY_STG

Constructor Summary

Constructors

Constructor and Description
SimulationParameters(RegulatoryGraph graph) empty constructor without parameter list.
SimulationParameters(SimulationParameterList param_list) empty constructor for everyday use.

Method Summary

Modifier and Type	Method and Description
SimulationParameters	clone()
void	copy_to(SimulationParameters other, Map mapping)
String	getDescr(List<org.colomoto.biolqm.NodeInfo> nodeOrder) Describe this parameter.
Map	getInitialState()
Map	getInputState()
String	getName()
UpdaterDefinition	getPriorityClassDefinition()
UpdaterDefinition	getUpdatingMode() Retrieve the stored definition
void	setName(String name) change the name of this object
void	setUpdatingMode(UpdaterDefinition updef) Store a priority definition
String	toString()
void	toXML(XMLWriter out) write the XML representation of this object to a file

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

STRATEGY_STG

public static final int STRATEGY_STG

See Also:

Constant Field Values

STRATEGY_SCCG

public static final int STRATEGY_SCCG

See Also:

Constant Field Values

STRATEGY_HTG

public static final int STRATEGY_HTG

See Also:

Constant Field Values

name

public String name

maxdepth

public int maxdepth

maxnodes

public int maxnodes

breadthFirst

public boolean breadthFirst

simulationStrategy

public int simulationStrategy

m_initState

public Map m_initState

m_input

public Map m_input

param_list

public SimulationParameterList param_list

Constructor Detail

SimulationParameters

public SimulationParameters(SimulationParameterList param_list)

empty constructor for everyday use.

Parameters:

param_list -

SimulationParameters

public SimulationParameters(RegulatoryGraph graph)

empty constructor without parameter list.

Parameters:

graph -

Method Detail

toString

public String toString()

Overrides:

toString in class Object

getDescr

public String getDescr(List<org.colomoto.biolqm.NodeInfo> nodeOrder)

Describe this parameter. It shows the full content of this simulation parameter, used to add a useful comment to the state transition graph.

Returns:

a human readable description of the parameter

toXML

public void toXML(XMLWriter out)
           throws IOException

Description copied from interface: XMLize

write the XML representation of this object to a file

Specified by:

toXML in interface XMLize

Throws:

IOException

clone

public SimulationParameters clone()

Overrides:

clone in class Object

getName

public String getName()

Specified by:

getName in interface NamedObject

Returns:

the name of this object

setName

public void setName(String name)

Description copied from interface: NamedObject

change the name of this object

Specified by:

setName in interface NamedObject

getInitialState

public Map getInitialState()

Specified by:

getInitialState in interface NamedStateStore

getInputState

public Map getInputState()

Specified by:

getInputState in interface NamedStateStore

getPriorityClassDefinition

public UpdaterDefinition getPriorityClassDefinition()

copy_to

public void copy_to(SimulationParameters other,
                    Map mapping)

getUpdatingMode

public UpdaterDefinition getUpdatingMode()

Description copied from interface: UpdaterDefinitionStore

Retrieve the stored definition

Specified by:

getUpdatingMode in interface UpdaterDefinitionStore

Returns:

the stored class

setUpdatingMode

public void setUpdatingMode(UpdaterDefinition updef)

Description copied from interface: UpdaterDefinitionStore

Store a priority definition

Specified by:

setUpdatingMode in interface UpdaterDefinitionStore