org.ginsim.service.tool.interactionanalysis

Class InteractionAnalysisService

java.lang.Object

org.ginsim.service.tool.interactionanalysis.InteractionAnalysisService

All Implemented Interfaces:

Service

@MetaInfServices(value=Service.class)
 @Alias(value="interactions-analysis")
 @ServiceStatus(value=RELEASED)
public class InteractionAnalysisService
extends Object
implements Service

Constructor Summary

Constructors

Constructor and Description
InteractionAnalysisService()

Method Summary

Modifier and Type	Method and Description
InteractionAnalysisAlgoResult	run(RegulatoryGraph g, Perturbation perturbation, List<RegulatoryNode> selectedNodes) Run the Interaction analysis by instantiating and calling a InteractionAnalysisAlgo and return an InteractionAnalysisAlgoResult containing the report and the colorizer.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

InteractionAnalysisService

public InteractionAnalysisService()

Method Detail

run

public InteractionAnalysisAlgoResult run(RegulatoryGraph g,
                                         Perturbation perturbation,
                                         List<RegulatoryNode> selectedNodes)

Run the Interaction analysis by instantiating and calling a InteractionAnalysisAlgo and return an InteractionAnalysisAlgoResult containing the report and the colorizer.

Parameters:

g - the graph where to search the non functional interactions.

perturbation - the perturbation definition

selectedNodes - the set of selected nodes to run the analysis on.

Returns:

an InteractionAnalysisAlgoResult containing the report and the colorizer.