org.ginsim.core.graph.regulatorygraph

Class LogicalModel2RegulatoryGraph

java.lang.Object

org.ginsim.core.graph.regulatorygraph.LogicalModel2RegulatoryGraph

public class LogicalModel2RegulatoryGraph
extends Object

Create a RegulatoryGraph based on a LogicalModel.

Author:

Aurelien Naldi

Method Summary

Modifier and Type	Method and Description
static RegulatoryGraph	importModel(org.colomoto.biolqm.LogicalModel model) Creates a new Regulatory graph, based on an existing logical model
static RegulatoryGraph	importModel(org.colomoto.biolqm.LogicalModel model, Collection<org.colomoto.biolqm.NodeInfo> to_remove) Creates a new Regulatory graph, based on an existing logical model

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

importModel

public static RegulatoryGraph importModel(org.colomoto.biolqm.LogicalModel model)

Creates a new Regulatory graph, based on an existing logical model

Parameters:

model - the (possibly stateful) logical model

Returns:

the derived regulatory graph

importModel

public static RegulatoryGraph importModel(org.colomoto.biolqm.LogicalModel model,
                                          Collection<org.colomoto.biolqm.NodeInfo> to_remove)

Creates a new Regulatory graph, based on an existing logical model

Parameters:

model - the (possibly stateful) logical model

to_remove - the nodes to remove

Returns:

the derived regulatory graph