org.ginsim.service.tool.circuit

Class CircuitDescr

java.lang.Object

org.ginsim.service.tool.circuit.CircuitDescr

public class CircuitDescr
extends Object

Field Summary

Fields

Modifier and Type	Field and Description
static int	ALL
static int	DUAL
static int	FALSE
static int	FUNCTIONAL
static int	NEGATIVE
static int	POSITIVE
long	score
int	sign
static String[]	SIGN_NAME
int[]	t_context
long[][]	t_mark
RegulatoryMultiEdge[]	t_me GsRegulatoryMultiEdges in this circuit
int[][]	t_sub
RegulatoryNode[]	t_vertex vertices in this circuit
List	v_all
List	v_dual
List	v_functional
List	v_negative
List	v_positive

Constructor Summary

Constructors

Constructor and Description
CircuitDescr()

Method Summary

Modifier and Type	Method and Description
boolean	check(CircuitAlgo algo, List nodeOrder) check if this circuit is functional.
void	clear()
protected int	getChildCount(int key)
int[]	getContext()
String	printMe(List nodeOrder) print the circuit in a nice order.
void	setContext(int[] tContext)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

t_vertex

public RegulatoryNode[] t_vertex

vertices in this circuit

t_me

public RegulatoryMultiEdge[] t_me

GsRegulatoryMultiEdges in this circuit

FALSE

public static final int FALSE

See Also:

Constant Field Values

ALL

public static final int ALL

See Also:

Constant Field Values

FUNCTIONAL

public static final int FUNCTIONAL

See Also:

Constant Field Values

POSITIVE

public static final int POSITIVE

See Also:

Constant Field Values

NEGATIVE

public static final int NEGATIVE

See Also:

Constant Field Values

DUAL

public static final int DUAL

See Also:

Constant Field Values

SIGN_NAME

public static final String[] SIGN_NAME

t_context

public int[] t_context

t_mark

public long[][] t_mark

t_sub

public int[][] t_sub

v_positive

public List v_positive

v_negative

public List v_negative

v_dual

public List v_dual

v_all

public List v_all

v_functional

public List v_functional

score

public long score

sign

public int sign

Constructor Detail

CircuitDescr

public CircuitDescr()

Method Detail

printMe

public String printMe(List nodeOrder)

print the circuit in a nice order.

Parameters:

nodeOrder -

Returns:

the tree of members of the circuit

check

public boolean check(CircuitAlgo algo,
                     List nodeOrder)

check if this circuit is functional.

Parameters:

algo -

nodeOrder -

Returns:

true if the circuit is functional

getChildCount

protected int getChildCount(int key)

clear

public void clear()

getContext

public int[] getContext()

setContext

public void setContext(int[] tContext)