org.ginsim.gui.utils.dialog.stackdialog

Class LogicalModelActionDialog

java.lang.Object

java.awt.Component

java.awt.Container

java.awt.Window

java.awt.Dialog

javax.swing.JDialog

org.ginsim.commongui.dialog.SimpleDialog

org.ginsim.gui.utils.dialog.stackdialog.StackDialog

org.ginsim.gui.utils.dialog.stackdialog.LogicalModelActionDialog

All Implemented Interfaces:

ImageObserver, MenuContainer, Serializable, EventListener, Accessible, ChangeListener, RootPaneContainer, WindowConstants, ProgressListener, PatternHolder, PerturbationHolder, ReductionHolder

Direct Known Subclasses:

AvatarLogicalModelActionDialog, BaseSimulationFrame, DecisionAnalysisFrame, GINMLFormatConfigPanel, LimitedSimulationFrame, NuSMVExportConfigPanel, PRISMExportConfigPanel, SATExportConfigPanel, StableStateSwingUI, TrapSpaceSwingUI

public abstract class LogicalModelActionDialog
extends StackDialog
implements ProgressListener, PerturbationHolder, ReductionHolder, ChangeListener

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JDialog

JDialog.AccessibleJDialog

Nested classes/interfaces inherited from class java.awt.Dialog

Dialog.AccessibleAWTDialog, Dialog.ModalExclusionType, Dialog.ModalityType

Nested classes/interfaces inherited from class java.awt.Window

Window.AccessibleAWTWindow, Window.Type

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field and Description
protected JCheckBox	cb_simplify
protected RegulatoryGraph	lrg
protected JPanel	mainPanel
Perturbation	perturbation
PerturbationSelectionPanel	perturbationPanel
ListOfPerturbations	perturbations
ReductionConfig	reduction
ReductionSelectionPanel	reductionPanel
ListOfReductionConfigs	reductions

Fields inherited from class org.ginsim.gui.utils.dialog.stackdialog.StackDialog

bcancel, bclose, brun

Fields inherited from class org.ginsim.commongui.dialog.SimpleDialog

id

Fields inherited from class javax.swing.JDialog

accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Dialog

DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors

Constructor and Description
LogicalModelActionDialog(RegulatoryGraph lrg, Frame parent, String id, int w, int h)

Method Summary

Modifier and Type	Method and Description
protected JPanel	getMainPanel()
NamedState	getPattern()
Perturbation	getPerturbation() Retrieve the stored perturbation.
ReductionConfig	getReduction() Retrieve the stored reduction.
void	milestone(Object data) Inform about intermediate step or result.
protected void	run()
abstract void	run(org.colomoto.biolqm.LogicalModel model)
void	setMainPanel(Component panel) Intercept the setMainPanel method to integrate with this frame's panel
void	setPattern(NamedState pattern)
void	setPerturbation(Perturbation perturbation) Select a perturbation.
void	setProgress(int n) Set a numeric progress counter
void	setProgress(String s) Show task status/progress.
void	setReduction(ReductionConfig reduction) Select a reduction.
void	setResult(Object result) The task finished and returns its result.
void	setUserID(String userID) Change the ID used to remember the selected perturbation (and other settings)
void	stateChanged(ChangeEvent e)

Methods inherited from class org.ginsim.gui.utils.dialog.stackdialog.StackDialog

addSecondaryPanel, addTempPanel, cancel, doCancel, doClose, escape, refreshMain, setMessage, setMessage, setRunning, setRunText, setVisiblePanel

Methods inherited from class org.ginsim.commongui.dialog.SimpleDialog

closeEvent, saveEvent, setAssociatedGUI

Methods inherited from class javax.swing.JDialog

addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Dialog

addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, setVisible, show, toBack

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

lrg

protected final RegulatoryGraph lrg

perturbations

public ListOfPerturbations perturbations

reductions

public ListOfReductionConfigs reductions

perturbationPanel

public PerturbationSelectionPanel perturbationPanel

reductionPanel

public ReductionSelectionPanel reductionPanel

perturbation

public Perturbation perturbation

reduction

public ReductionConfig reduction

mainPanel

protected JPanel mainPanel

cb_simplify

protected JCheckBox cb_simplify

Constructor Detail

LogicalModelActionDialog

public LogicalModelActionDialog(RegulatoryGraph lrg,
                                Frame parent,
                                String id,
                                int w,
                                int h)

Method Detail

setUserID

public void setUserID(String userID)

Change the ID used to remember the selected perturbation (and other settings)

Parameters:

userID -

getMainPanel

protected JPanel getMainPanel()

setProgress

public void setProgress(int n)

Description copied from interface: ProgressListener

Set a numeric progress counter

Specified by:

setProgress in interface ProgressListener

setProgress

public void setProgress(String s)

Description copied from interface: ProgressListener

Show task status/progress.

Specified by:

setProgress in interface ProgressListener

milestone

public void milestone(Object data)

Description copied from interface: ProgressListener

Inform about intermediate step or result. Handling such events is not mandatory but can allow extensions

Specified by:

milestone in interface ProgressListener

getPerturbation

public Perturbation getPerturbation()

Description copied from interface: PerturbationHolder

Retrieve the stored perturbation.

Specified by:

getPerturbation in interface PerturbationHolder

Returns:

the selected perturbation

setPerturbation

public void setPerturbation(Perturbation perturbation)

Description copied from interface: PerturbationHolder

Select a perturbation.

Specified by:

setPerturbation in interface PerturbationHolder

getReduction

public ReductionConfig getReduction()

Description copied from interface: ReductionHolder

Retrieve the stored reduction.

Specified by:

getReduction in interface ReductionHolder

Returns:

the selected reduction

setReduction

public void setReduction(ReductionConfig reduction)

Description copied from interface: ReductionHolder

Select a reduction.

Specified by:

setReduction in interface ReductionHolder

getPattern

public NamedState getPattern()

Specified by:

getPattern in interface PatternHolder

setPattern

public void setPattern(NamedState pattern)

Specified by:

setPattern in interface PatternHolder

stateChanged

public void stateChanged(ChangeEvent e)

Specified by:

stateChanged in interface ChangeListener

setResult

public void setResult(Object result)

Description copied from interface: ProgressListener

The task finished and returns its result.

Specified by:

setResult in interface ProgressListener

setMainPanel

public void setMainPanel(Component panel)

Intercept the setMainPanel method to integrate with this frame's panel

Overrides:

setMainPanel in class StackDialog

Parameters:

panel -

run

protected void run()
            throws GsException

Specified by:

run in class StackDialog

Throws:

GsException

run

public abstract void run(org.colomoto.biolqm.LogicalModel model)

Parameters:

model -