org.ginsim.service.tool.reg2dyn.updater

Interface SimulationUpdater

All Superinterfaces:

Iterator

All Known Implementing Classes:

BaseSimulationUpdater, DeterministicSimulationUpdater, GenericSimulationUpdater, SynchronousSimulationUpdater

public interface SimulationUpdater
extends Iterator

This is the part of the simulation in charge for generating the following states. supported methods are:

• synchronous search: all changes at once, each state has at most one successor
• asynchronous search: changes one by one, each state can have many successors
• by priority class: genes are classed by priority groups.
  • only changes on the higher priority group(s) containing changing genes will be applied.
  • if this concerns several groups, changes corresponding to each group will be applied asynchronously
  • each group can be either synchronous or asynchronous, changes will be applied all at once or one by one, depending on the group!
  • +1 and -1 transitions can be separated to create really fine-tuned groups

Method Summary

Modifier and Type	Method and Description
SimulationUpdater	cloneForState(byte[] state)
byte[]	nextState()
void	setState(byte[] state, int depth, Object node)

Methods inherited from interface java.util.Iterator

forEachRemaining, hasNext, next, remove

Method Detail

nextState

byte[] nextState()

setState

void setState(byte[] state,
              int depth,
              Object node)

cloneForState

SimulationUpdater cloneForState(byte[] state)