org.ginsim.service.tool.graphcomparator

Class RegulatoryGraphComparator

java.lang.Object

java.lang.Thread

org.colomoto.common.task.AbstractTask<GraphComparatorResult<V,E,G>>

org.ginsim.service.tool.graphcomparator.GraphComparator<RegulatoryNode,RegulatoryMultiEdge,RegulatoryGraph>

org.ginsim.service.tool.graphcomparator.RegulatoryGraphComparator

All Implemented Interfaces:

Runnable, Callable<GraphComparatorResult<RegulatoryNode,RegulatoryMultiEdge,RegulatoryGraph>>, org.colomoto.common.task.Task<GraphComparatorResult<RegulatoryNode,RegulatoryMultiEdge,RegulatoryGraph>>

public class RegulatoryGraphComparator
extends GraphComparator<RegulatoryNode,RegulatoryMultiEdge,RegulatoryGraph>

Compare 2 RegulatoryGraph

Since:

January 2009

Author:

Duncan Berenguier

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

Thread.State, Thread.UncaughtExceptionHandler

Field Summary

Fields inherited from class org.ginsim.service.tool.graphcomparator.GraphComparator

graph_1, graph_2, graph_new, result

Fields inherited from class org.colomoto.common.task.AbstractTask

canceled

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors

Constructor and Description
RegulatoryGraphComparator(RegulatoryGraph g1, RegulatoryGraph g2)

Method Summary

Modifier and Type	Method and Description
protected void	addtoannotation(Annotation a, Annotation a1)
String	compareEdges(RegulatoryMultiEdge e1, RegulatoryMultiEdge e2)
protected RegulatoryMultiEdge	copyEdge(RegulatoryGraph srcGraph, RegulatoryMultiEdge e)
protected RegulatoryNode	copyNode(RegulatoryGraph g, RegulatoryNode v1)
protected void	doSpecialisedComparison()

Methods inherited from class org.ginsim.service.tool.graphcomparator.GraphComparator

getDiffGraph, getG1, getG2, log, log, log, log, log, performTask

Methods inherited from class org.colomoto.common.task.AbstractTask

background, call, cancel, getResult, getStatus, run

Methods inherited from class java.lang.Thread

activeCount, checkAccess, clone, countStackFrames, currentThread, destroy, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, stop, suspend, toString, yield

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.colomoto.common.task.Task

setParameter, setParameters, setParameters

Constructor Detail

RegulatoryGraphComparator

public RegulatoryGraphComparator(RegulatoryGraph g1,
                                 RegulatoryGraph g2)

Method Detail

copyNode

protected RegulatoryNode copyNode(RegulatoryGraph g,
                                  RegulatoryNode v1)

Specified by:

copyNode in class GraphComparator<RegulatoryNode,RegulatoryMultiEdge,RegulatoryGraph>

copyEdge

protected RegulatoryMultiEdge copyEdge(RegulatoryGraph srcGraph,
                                       RegulatoryMultiEdge e)

Specified by:

copyEdge in class GraphComparator<RegulatoryNode,RegulatoryMultiEdge,RegulatoryGraph>

doSpecialisedComparison

protected void doSpecialisedComparison()

Specified by:

doSpecialisedComparison in class GraphComparator<RegulatoryNode,RegulatoryMultiEdge,RegulatoryGraph>

addtoannotation

protected void addtoannotation(Annotation a,
                               Annotation a1)

compareEdges

public String compareEdges(RegulatoryMultiEdge e1,
                           RegulatoryMultiEdge e2)