org.ginsim.core.graph.dynamicgraph

Class DynamicNode

java.lang.Object

org.ginsim.core.graph.dynamicgraph.DynamicNode

public class DynamicNode
extends Object

A node in a State Transition Graph (i.e. a state of the regulatory graph).

Author:

Aurelien Naldi

Field Summary

Fields

Modifier and Type	Field and Description
int	EPSILON
int	MINUS
int	PLUS pattern constants
byte[]	state each int is the state of the corresponding gene in the regulatory graph (according to nodeOrder).

Constructor Summary

Constructors

Constructor and Description
DynamicNode(byte[] state)
DynamicNode(String value) create a dynamicNode from it's id: the first character is ignored (must be a letter to be a valid id) each following character is parsed as int

Method Summary

Modifier and Type	Method and Description
boolean	equals(Object obj)
String	getId()
int[]	getPattern(Graph<DynamicNode,Edge<DynamicNode>> graph)
String	getPatternString(Graph<DynamicNode,Edge<DynamicNode>> graph)
int	hashCode()
boolean	isStable() is this a stable state ?
void	setStable(boolean s, NodeAttributesReader vreader) set if this state is stable.
String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

state

public final byte[] state

each int is the state of the corresponding gene in the regulatory graph (according to nodeOrder).

PLUS

public final int PLUS

pattern constants

See Also:

Constant Field Values

MINUS

public final int MINUS

See Also:

Constant Field Values

EPSILON

public final int EPSILON

See Also:

Constant Field Values

Constructor Detail

DynamicNode

public DynamicNode(byte[] state)

Parameters:

state -

DynamicNode

public DynamicNode(String value)

create a dynamicNode from it's id: the first character is ignored (must be a letter to be a valid id) each following character is parsed as int

Parameters:

value -

Method Detail

isStable

public boolean isStable()

is this a stable state ?

Returns:

true if the node is stable

setStable

public void setStable(boolean s,
                      NodeAttributesReader vreader)

set if this state is stable.

Parameters:

s -

vreader -

toString

public String toString()

Overrides:

toString in class Object

getId

public String getId()

Returns:

the node's id.

getPattern

public int[] getPattern(Graph<DynamicNode,Edge<DynamicNode>> graph)

Returns:

the node's pattern of commutation.

getPatternString

public String getPatternString(Graph<DynamicNode,Edge<DynamicNode>> graph)

Returns:

the node's pattern of commutation.

equals

public boolean equals(Object obj)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object