org.ginsim.service.tool.stableregions

Class PNGraph

java.lang.Object

org.ginsim.service.tool.stableregions.PNGraph

public class PNGraph
extends Object

Constructor Summary

Constructors

Constructor and Description
PNGraph()

Method Summary

Modifier and Type	Method and Description
void	addComplementaryNode(String node, String complement)
void	addEdge(String node1, String node2)
void	addInputToTransition(String s, String t)
void	addNode(String node, String placeTransition)
void	addOutputToTransition(String t, String s)
void	addSourceNode(String node)
void	addTransition(String t)
int	get_size()
List<List<String>>	getCycles()
String	getomplementaryNode(String node)
List<Set<String>>	getOscillations()
Set<Set<String>>	getStableMotifs()
List<String>	getTransitionInputs(String t)
String	getTransitionOutput(String t)
Set<String>	getTransitions()
boolean	isOscillation(Set<String> set)
boolean	isPlace(String node)
boolean	isStableMotif(Set<String> set)
boolean	isTransition(String node)
void	printAttractors(Set<Set<String>> sccs)
void	printPnGraph()
void	removeTransition(String transition)
void	setNotSourceNode(String node)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PNGraph

public PNGraph()

Method Detail

addNode

public void addNode(String node,
                    String placeTransition)

addSourceNode

public void addSourceNode(String node)

setNotSourceNode

public void setNotSourceNode(String node)

addComplementaryNode

public void addComplementaryNode(String node,
                                 String complement)

getomplementaryNode

public String getomplementaryNode(String node)

removeTransition

public void removeTransition(String transition)

addTransition

public void addTransition(String t)

getTransitions

public Set<String> getTransitions()

isTransition

public boolean isTransition(String node)

isPlace

public boolean isPlace(String node)

getTransitionOutput

public String getTransitionOutput(String t)

getTransitionInputs

public List<String> getTransitionInputs(String t)

addInputToTransition

public void addInputToTransition(String s,
                                 String t)

addOutputToTransition

public void addOutputToTransition(String t,
                                  String s)

addEdge

public void addEdge(String node1,
                    String node2)

get_size

public int get_size()

printPnGraph

public void printPnGraph()

isOscillation

public boolean isOscillation(Set<String> set)

isStableMotif

public boolean isStableMotif(Set<String> set)

printAttractors

public void printAttractors(Set<Set<String>> sccs)

getOscillations

public List<Set<String>> getOscillations()

getStableMotifs

public Set<Set<String>> getStableMotifs()

getCycles

public List<List<String>> getCycles()