public class AvatarConfigFrame extends AvatarLogicalModelActionDialog
JDialog.AccessibleJDialog
Dialog.AccessibleAWTDialog, Dialog.ModalExclusionType, Dialog.ModalityType
Window.AccessibleAWTWindow, Window.Type
Container.AccessibleAWTContainer
Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy
Modifier and Type | Field and Description |
---|---|
JComboBox<EnumAlgorithm> |
jcbAlgorithm
selected simulation: Avatar, Firefront or Monte Carlo
|
JTextArea |
jtaOutput |
SimulationPanel |
panelAvatar
pointer to the panel with the parameters for an avatar simulation
|
SimulationPanel |
panelFF
pointer to the panel with the parameters for a firefront simulation
|
SimulationPanel |
panelMC
pointer to the panel with the parameters for a Monte Carlo simulation
|
JCheckBox |
quiet
whether detailed logs should be printed (not advisable for complex models)
|
CompleteStatePanel |
states
pointer to the panel with the initial states and oracles
|
AvatarStateStore |
statestore
named store with the initial states and oracles
|
yAdjustment
cb_simplify, lrg, mainPanel, perturbation, perturbationPanel, perturbations, reduction, reductionPanel, reductions
bcancel, bclose, brun
id
accessibleContext, rootPane, rootPaneCheckingEnabled
DEFAULT_MODALITY_TYPE
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT
DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH
Constructor and Description |
---|
AvatarConfigFrame(RegulatoryGraph graph,
JFrame _parent)
Creates the panel with avatar-based simulations from the current graph
|
Modifier and Type | Method and Description |
---|---|
void |
doClose() |
void |
refresh(AvatarParameters param)
Updates the parameters of the simulation panel given the new context
|
void |
run(org.colomoto.biolqm.LogicalModel _model) |
void |
setCurrent(AvatarParameters p) |
getMainPanel, setMainPanel
getPattern, getPerturbation, getReduction, milestone, run, setMainPanel, setPattern, setPerturbation, setProgress, setProgress, setReduction, setResult, setUserID, stateChanged
addSecondaryPanel, addTempPanel, cancel, doCancel, escape, refreshMain, setMessage, setMessage, setRunning, setRunText, setVisiblePanel
closeEvent, saveEvent, setAssociatedGUI
addImpl, createRootPane, dialogInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update
addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, setVisible, show, toBack
addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront
add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
getPerturbation, setPerturbation
getReduction, setReduction
getPattern, setPattern
stateChanged
public SimulationPanel panelAvatar
public SimulationPanel panelFF
public SimulationPanel panelMC
public CompleteStatePanel states
public JComboBox<EnumAlgorithm> jcbAlgorithm
public JCheckBox quiet
public AvatarStateStore statestore
public JTextArea jtaOutput
public AvatarConfigFrame(RegulatoryGraph graph, JFrame _parent)
graph
- regulatory graph (with possibly contextual information) on which
to apply the services_parent
- pointer to the parent panel (to return upon closing the panel for
the analysis of attractors)public void refresh(AvatarParameters param)
param
- the simulation context (parameters) to use to update the fields of
the main panelpublic void run(org.colomoto.biolqm.LogicalModel _model)
run
in class LogicalModelActionDialog
public void doClose()
doClose
in class StackDialog
public void setCurrent(AvatarParameters p)
Copyright © 2005–2020. All rights reserved.