org.ginsim.core.graph.regulatorygraph.namedstates

Class NamedState

java.lang.Object

org.ginsim.core.graph.regulatorygraph.namedstates.NamedState

All Implemented Interfaces:

NamedObject

public class NamedState
extends Object
implements NamedObject

Defines a (set of) named state(s): a name associated to an activity pattern.

Author:

Aurelien Naldi

Constructor Summary

Constructors

Constructor and Description
NamedState()

Method Summary

Modifier and Type	Method and Description
byte	getFirstValue(org.colomoto.biolqm.NodeInfo ni)
Map<org.colomoto.biolqm.NodeInfo,List<Integer>>	getMap()
Map<org.colomoto.biolqm.NodeInfo,List<Integer>>	getMaxValueTable()
String	getName()
org.colomoto.biolqm.helper.state.StatePattern	getStatePattern() Convert the internal lists of values into lists of ranges for use in bioLQM.
void	setData(String[] t_s, List<RegulatoryNode> nodeOrder)
void	setMaxValueTable(Map<org.colomoto.biolqm.NodeInfo,List<Integer>> m)
void	setName(String name) change the name of this object
void	setState(int[] state, List<RegulatoryNode> nodeOrder)
void	setState(int[] state, List<RegulatoryNode> nodeOrder, boolean input)
void	setStateAll(int[] state, List<RegulatoryNode> nodeOrder)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

NamedState

public NamedState()

Method Detail

toString

public String toString()

Overrides:

toString in class Object

setState

public void setState(int[] state,
                     List<RegulatoryNode> nodeOrder)

setState

public void setState(int[] state,
                     List<RegulatoryNode> nodeOrder,
                     boolean input)

setStateAll

public void setStateAll(int[] state,
                        List<RegulatoryNode> nodeOrder)

getMaxValueTable

public Map<org.colomoto.biolqm.NodeInfo,List<Integer>> getMaxValueTable()

setMaxValueTable

public void setMaxValueTable(Map<org.colomoto.biolqm.NodeInfo,List<Integer>> m)

setData

public void setData(String[] t_s,
                    List<RegulatoryNode> nodeOrder)

getName

public String getName()

Specified by:

getName in interface NamedObject

Returns:

the name of this object

setName

public void setName(String name)

Description copied from interface: NamedObject

change the name of this object

Specified by:

setName in interface NamedObject

getMap

public Map<org.colomoto.biolqm.NodeInfo,List<Integer>> getMap()

getFirstValue

public byte getFirstValue(org.colomoto.biolqm.NodeInfo ni)

getStatePattern

public org.colomoto.biolqm.helper.state.StatePattern getStatePattern()

Convert the internal lists of values into lists of ranges for use in bioLQM.

Returns: