org.ginsim.core.graph.regulatorygraph.perturbation

Class PerturbationParser

java.lang.Object

org.xml.sax.helpers.DefaultHandler

org.ginsim.common.xml.XMLHelper

org.ginsim.core.graph.regulatorygraph.perturbation.PerturbationParser

All Implemented Interfaces:

ContentHandler, DTDHandler, EntityResolver, ErrorHandler

public class PerturbationParser
extends XMLHelper

parser for perturbation definition file

Field Summary

Fields inherited from class org.ginsim.common.xml.XMLHelper

BOTH, curval, ENDONLY, m_call, NOCALL, s_dtd, s_filename, STARTONLY, xr

Constructor Summary

Constructors

Constructor and Description
PerturbationParser(RegulatoryGraph graph)

Method Summary

Modifier and Type	Method and Description
protected void	endElement(int id)
ListOfPerturbations	getParameters()
protected void	startElement(int id, Attributes attributes)

Methods inherited from class org.ginsim.common.xml.XMLHelper

addCall, addCall, addCall, addCall, addCall, addEntity, characters, endElement, error, getAttributeValueWithDefault, getWarnings, resolveEntity, startElement, startParsing, startParsing, startParsing, startParsing, warning

Methods inherited from class org.xml.sax.helpers.DefaultHandler

endDocument, endPrefixMapping, fatalError, ignorableWhitespace, notationDecl, processingInstruction, setDocumentLocator, skippedEntity, startDocument, startPrefixMapping, unparsedEntityDecl

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PerturbationParser

public PerturbationParser(RegulatoryGraph graph)

Parameters:

graph -

Method Detail

endElement

protected void endElement(int id)

Overrides:

endElement in class XMLHelper

startElement

protected void startElement(int id,
                            Attributes attributes)

Overrides:

startElement in class XMLHelper

getParameters

public ListOfPerturbations getParameters()

Returns:

the list of perturbations read by this parser.