Modifier and Type | Class and Description |
---|---|
class |
CADPExportService
GINsim export service for CADP including:
LOTOS NT specifications, (common, module and integration), EXP specifications
(synchronization vectors), SVL script, MCL properties and README file
|
Modifier and Type | Class and Description |
---|---|
class |
LRGDocumentationService |
Modifier and Type | Class and Description |
---|---|
class |
ImageExportService
Export the graph view as image (PNG or SVG).
|
Modifier and Type | Class and Description |
---|---|
class |
NuSMVExportService
GINsim export service capable of encoding the working model into a NuSMV
specification.
|
Modifier and Type | Class and Description |
---|---|
class |
PRISMExportService |
Modifier and Type | Class and Description |
---|---|
class |
RegGraphExportService
GINsim export service for the Regulatory Graph format.
|
Modifier and Type | Class and Description |
---|---|
class |
SATExportService
GINsim export service capable of encoding the model properties into a SAT
specification in CNF.
|
Modifier and Type | Class and Description |
---|---|
class |
GraphStructureExportService
Export the structure of a graph to various formats: GraphViz, Biolayout, and cytoscape.
|
Modifier and Type | Class and Description |
---|---|
class |
BNetFormatService
GINsim export service for the BoolNet format.
|
class |
BoolsimFormatService
GINsim export service for the boolsim format.
|
class |
CNetFormatService
GINsim export service for the CNET format used by the BNS tool.
|
class |
GNAFormatService
GINsim export service for the GNA (non-xml) format.
|
class |
LogicalTruthTableFormatService
GINsim import/export service for the implicant table format.
|
class |
MaBoSSExportService
GINsim export service capable of encoding the working model into the MaBoSS format
|
class |
PetriNetAPNNFormatService
GINsim export service for the APNN Petri net format.
|
class |
PetriNetINAFormatService
GINsim export service for the INA Petri net format.
|
class |
PetriNetPNMLFormatService
GINsim export service for the PNML Petri net format.
|
class |
TruthTableFormatService
GINsim import service for the TruthTable Format.
|
Modifier and Type | Class and Description |
---|---|
class |
GINMLFormatService
GINsim export service for the GINML (model-only) format.
|
Modifier and Type | Class and Description |
---|---|
class |
SBMLqualService |
Modifier and Type | Class and Description |
---|---|
class |
LayoutService
This class contains different placement algorithms,
two algorithms for the placement in level and two others for the placement on rings
|
Modifier and Type | Class and Description |
---|---|
class |
AvatarService
Provider of Avatar services in GINsim
|
class |
AvatarServiceFacade
Facade of an Avatar simulation.
Instantiates an Avatar simulation from arguments within a command line, provides soundness checks, and outputs statistics and help tips. |
class |
FirefrontServiceFacade
Facade of a Firefront simulation.
Instantiates a Firefront simulation from arguments within a command line, provides soundness checks, and outputs statistics and help tips. |
class |
MonteCarloServiceFacade
Facade of a Monte Carlo simulation.
Instantiates a Monte Carlo simulation from arguments within a command line, provides soundness checks, and outputs statistics and help tips. |
Modifier and Type | Class and Description |
---|---|
class |
CircuitService |
Modifier and Type | Class and Description |
---|---|
class |
CompositionService
Module composition service
|
Modifier and Type | Class and Description |
---|---|
class |
GraphComparatorService |
Modifier and Type | Class and Description |
---|---|
class |
InteractionAnalysisService |
Modifier and Type | Class and Description |
---|---|
class |
LocalGraphService |
Modifier and Type | Class and Description |
---|---|
class |
ModelBooleanizerService
Model Booleanizer service.
|
Modifier and Type | Class and Description |
---|---|
class |
ModelReductionService |
Modifier and Type | Class and Description |
---|---|
class |
ModelReversionService
Model reversion service.
|
Modifier and Type | Class and Description |
---|---|
class |
PolytopesService |
Modifier and Type | Class and Description |
---|---|
class |
Reg2DynService |
Modifier and Type | Class and Description |
---|---|
class |
SCCGraphService |
Modifier and Type | Class and Description |
---|---|
class |
SimulationService
Simple simulation service
|
Modifier and Type | Class and Description |
---|---|
class |
StableRegionsService |
Modifier and Type | Class and Description |
---|---|
class |
StableStatesService
This service provides an analytic search for stable states, implemented in bioLQM.
|
Modifier and Type | Class and Description |
---|---|
class |
TrapSpaceServiceWrapper
Search for trap-spaces in Regulatory graphs.
|
Modifier and Type | Class and Description |
---|---|
class |
CADPExportServiceGUI
CADP Export Service
|
Modifier and Type | Class and Description |
---|---|
class |
LRGDocumentationServiceGUI
GenericDocumentExport is a plugin to export the documentation of a model into multiples document format.
|
Modifier and Type | Class and Description |
---|---|
class |
ImageExportServiceGUI
GUI integration of the PNG and SVG exports.
|
Modifier and Type | Class and Description |
---|---|
class |
MaBoSSExportServiceGUI
GUI Action to export model to the MaBoSS format
|
Modifier and Type | Class and Description |
---|---|
class |
NuSMVExportServiceGUI
GUI Action to export a NuSMV model description
|
Modifier and Type | Class and Description |
---|---|
class |
PetriNetExportServiceGUI
GUI Action to export a LRG into Petri net
|
Modifier and Type | Class and Description |
---|---|
class |
PRISMExportServiceGUI
GUI Action to export a PRISM model description
|
Modifier and Type | Class and Description |
---|---|
class |
RegGraphExportServiceGUI
GUI Action to export the regulatory graph interactions and corresponding
signs.
|
Modifier and Type | Class and Description |
---|---|
class |
SATExportServiceGUI
GINsim export service capable of encoding the model properties into a SAT
specification in CNF.
|
Modifier and Type | Class and Description |
---|---|
class |
GraphStructureExportServiceGUI
Export service to struct format
|
Modifier and Type | Class and Description |
---|---|
class |
BoolNetFormatServiceGUI
GUI Action to export model to the BoolNet format
|
class |
BoolsimFormatServiceGUI
GUI Action to export model to the boolsim format
|
class |
CNetFormatServiceGUI
GUI Action to export model to the CNET format
|
class |
GNAFormatServiceGUI
GUI Action to export model to the GNA (non-xml) format
|
class |
TruthTableFormatServiceGUI
GUI Action to import create a model specified in the TruthTable format
|
Modifier and Type | Class and Description |
---|---|
class |
GINMLFormatServiceGUI
GINsim export service GUI for the GINML (model-only) format.
|
Modifier and Type | Class and Description |
---|---|
class |
SBMLqualServiceGUI |
Modifier and Type | Class and Description |
---|---|
class |
LayoutServiceGUI |
Modifier and Type | Class and Description |
---|---|
class |
AvatarServiceGUI
GUI for the avatar simulation services
|
Modifier and Type | Class and Description |
---|---|
class |
CircuitServiceGUI
main method for the circuit service
|
Modifier and Type | Class and Description |
---|---|
class |
CompositionServiceGUI
Register the Composition Service
|
Modifier and Type | Class and Description |
---|---|
class |
DataViewerServiceGUI
GUI to view the associated objects.
|
Modifier and Type | Class and Description |
---|---|
class |
DecisionAnalysisServiceGUI |
Modifier and Type | Class and Description |
---|---|
class |
DynamicAnalyserServiceGUI
offer some facilities to analyse the state transition graph.
|
Modifier and Type | Class and Description |
---|---|
class |
GraphComparatorServiceGUI |
Modifier and Type | Class and Description |
---|---|
class |
InteractionAnalysisServiceGUI |
Modifier and Type | Class and Description |
---|---|
class |
LocalGraphServiceGUI |
Modifier and Type | Class and Description |
---|---|
class |
ModelBooleanizerServiceGUI
Main method to Booleanize a Multivalued model
|
Modifier and Type | Class and Description |
---|---|
class |
ReductionServiceGUI
main method for the model simplification plugin
|
Modifier and Type | Class and Description |
---|---|
class |
ModelReversionServiceGUI
Main method for the model reversion plugin
|
Modifier and Type | Class and Description |
---|---|
class |
OmddVizServiceGUI |
Modifier and Type | Class and Description |
---|---|
class |
PathFindingServiceGUI |
Modifier and Type | Class and Description |
---|---|
class |
PolytopesVizServiceGUI |
Modifier and Type | Class and Description |
---|---|
class |
Reg2DynServiceGUI
main method for the reg2dyn plugin
|
Modifier and Type | Class and Description |
---|---|
class |
LimitedSimulationServiceGUI |
Modifier and Type | Class and Description |
---|---|
class |
RegulatoryGraphAnimationServiceGUI
register the aRegGraph plugin: animate the regulatory graph
according to a path in the associated state transition graph.
|
Modifier and Type | Class and Description |
---|---|
class |
RegulatoryFunctionTreeServiceGUI |
Modifier and Type | Class and Description |
---|---|
class |
ConnectivityServiceGUI
register the scc service
|
Modifier and Type | Class and Description |
---|---|
class |
StableRegionsServiceGUI |
Modifier and Type | Class and Description |
---|---|
class |
StableStatesServiceGUI
Define the action for stableStates service
|
Modifier and Type | Class and Description |
---|---|
class |
StateInRegulatoryGraphServiceGUI |
Modifier and Type | Class and Description |
---|---|
class |
TrapSpaceServiceGUI
Define the action for stableStates service
|
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