Package | Description |
---|---|
org.ginsim.core.graph |
Define the main Graph interfaces, and a GraphManager to handle graph types
|
org.ginsim.core.graph.backend |
Implementation of the graph backend.
|
org.ginsim.core.graph.dynamicgraph |
State Transition Graphs, representing dynamical behaviours.
|
org.ginsim.core.graph.regulatorygraph |
The regulatory graph is the main graph, it represents the model.
|
org.ginsim.core.graph.tree |
The Tree graph is a representation of a logical functions, allowing a graphical representation.
|
org.ginsim.core.graph.view |
Define the layout and appearance of graph elements.
|
org.ginsim.core.graph.view.style |
Styles define visual properties for graph elements.
|
org.ginsim.service.tool.graphcomparator | |
org.ginsim.service.tool.interactionanalysis | |
org.ginsim.service.tool.localgraph | |
org.ginsim.service.tool.scc | |
org.ginsim.servicegui.tool.lrgcolorizer | |
org.ginsim.servicegui.tool.pathfinding | |
org.ginsim.servicegui.tool.regulatorygraphanimation |
animate the regulatory graph (by simply changing nodes and edge's colors)
according to a path/state in the state transition graph.
|
Modifier and Type | Method and Description |
---|---|
EdgeStyle |
GraphFactory.createDefaultEdgeStyle(G graph) |
EdgeStyle |
AbstractGraphFactory.createDefaultEdgeStyle(G graph) |
Modifier and Type | Method and Description |
---|---|
void |
GraphBackend.setDefaultEdgeStyle(EdgeStyle<V,E> style) |
Modifier and Type | Method and Description |
---|---|
EdgeStyle<V,E> |
EdgeAttributeReaderImpl.getDefaultEdgeStyle() |
EdgeStyle<V,E> |
EdgeViewInfoImpl.getStyle() |
EdgeStyle |
EdgeAttributeReaderImpl.getStyle() |
Modifier and Type | Method and Description |
---|---|
void |
JgraphtBackendImpl.setDefaultEdgeStyle(EdgeStyle<V,E> style) |
void |
EdgeAttributeReaderImpl.setStyle(EdgeStyle style) |
void |
EdgeViewInfoImpl.setStyle(EdgeStyle<V,E> style) |
Modifier and Type | Class and Description |
---|---|
class |
DefaultDynamicEdgeStyle
Default style for edges in the State Transition Graph.
|
Modifier and Type | Method and Description |
---|---|
EdgeStyle<DynamicNode,DynamicEdge> |
DynamicGraphFactory.createDefaultEdgeStyle(DynamicGraph graph) |
Modifier and Type | Class and Description |
---|---|
class |
DefaultRegulatoryEdgeStyle
Default style for edge of regulatory graphs.
|
Modifier and Type | Method and Description |
---|---|
EdgeStyle<RegulatoryNode,RegulatoryMultiEdge> |
RegulatoryGraphFactory.createDefaultEdgeStyle(RegulatoryGraph graph) |
Modifier and Type | Class and Description |
---|---|
class |
DefaultTreeEdgeStyle |
Modifier and Type | Method and Description |
---|---|
EdgeStyle<TreeNode,TreeEdge> |
TreeFactory.createDefaultEdgeStyle(Tree graph) |
Modifier and Type | Method and Description |
---|---|
EdgeStyle<V,E> |
EdgeAttributesReader.getDefaultEdgeStyle()
Get the default style used for the edges in this graph.
|
EdgeStyle |
EdgeAttributesReader.getStyle() |
EdgeStyle<V,E> |
EdgeViewInfo.getStyle() |
Modifier and Type | Method and Description |
---|---|
void |
EdgeAttributesReader.setStyle(EdgeStyle style) |
void |
EdgeViewInfo.setStyle(EdgeStyle<V,E> style) |
Modifier and Type | Class and Description |
---|---|
class |
EdgeStyleImpl<V,E extends Edge<V>>
Simple implementation for EdgeStyle.
|
class |
EdgeStyleOverride<V,E extends Edge<V>> |
Modifier and Type | Method and Description |
---|---|
EdgeStyle<V,E> |
StyleManager.addEdgeStyle()
Create a new edge style.
|
EdgeStyle<V,E> |
StyleManager.getDefaultEdgeStyle()
Retrieve the default style for edges
|
EdgeStyle<V,E> |
StyleProvider.getEdgeStyle(E edge,
EdgeStyle<V,E> baseStyle)
Get the style used for an edge.
|
EdgeStyle<V,E> |
StyleManager.getEdgeStyle(String name)
Retrieve an edge style based on its name.
|
EdgeStyle |
StyleManager.getUsedEdgeStyle(E edge)
Get the edge style stored in the graph.
|
EdgeStyle |
StyleManager.getViewEdgeStyle(E edge)
Get the edge style used for the view.
|
EdgeStyle |
StyleManager.guessEdgeStyle(String qName,
Attributes attributes)
Find an edge style corresponding to the desired attributes.
|
Modifier and Type | Method and Description |
---|---|
List<EdgeStyle<V,E>> |
StyleManager.getEdgeStyles()
Get the list of all edge styles
|
Modifier and Type | Method and Description |
---|---|
void |
StyleManager.applyEdgeStyle(Collection<E> edges,
EdgeStyle<V,E> style)
Apply a style to a group of edges.
|
void |
StyleManager.applyEdgeStyle(E edge,
EdgeStyle<V,E> style)
Apply a style to a single edge.
|
EdgeStyle<V,E> |
StyleProvider.getEdgeStyle(E edge,
EdgeStyle<V,E> baseStyle)
Get the style used for an edge.
|
Constructor and Description |
---|
EdgeStyleImpl(String name,
EdgeStyle<V,E> parent) |
EdgeStyleOverride(EdgeStyle<V,E> style) |
Modifier and Type | Method and Description |
---|---|
EdgeStyle |
GraphComparatorStyleProvider.getEdgeStyle(Edge edge,
EdgeStyle baseStyle) |
Modifier and Type | Method and Description |
---|---|
EdgeStyle |
GraphComparatorStyleProvider.getEdgeStyle(Edge edge,
EdgeStyle baseStyle) |
Modifier and Type | Method and Description |
---|---|
EdgeStyle |
InteractionAnalysisStyleProvider.getEdgeStyle(Edge edge,
EdgeStyle baseStyle) |
Modifier and Type | Method and Description |
---|---|
EdgeStyle |
InteractionAnalysisStyleProvider.getEdgeStyle(Edge edge,
EdgeStyle baseStyle) |
Modifier and Type | Method and Description |
---|---|
EdgeStyle<RegulatoryNode,RegulatoryMultiEdge> |
LocalGraphStyleProvider.getEdgeStyle(RegulatoryMultiEdge edge,
EdgeStyle<RegulatoryNode,RegulatoryMultiEdge> baseStyle) |
Modifier and Type | Method and Description |
---|---|
EdgeStyle<RegulatoryNode,RegulatoryMultiEdge> |
LocalGraphStyleProvider.getEdgeStyle(RegulatoryMultiEdge edge,
EdgeStyle<RegulatoryNode,RegulatoryMultiEdge> baseStyle) |
Modifier and Type | Method and Description |
---|---|
EdgeStyle |
ConnectivityStyleProvider.getEdgeStyle(Edge edge,
EdgeStyle baseStyle) |
Modifier and Type | Method and Description |
---|---|
EdgeStyle |
ConnectivityStyleProvider.getEdgeStyle(Edge edge,
EdgeStyle baseStyle) |
Modifier and Type | Method and Description |
---|---|
EdgeStyle<RegulatoryNode,RegulatoryMultiEdge> |
LRGPatternStyleProvider.getEdgeStyle(RegulatoryMultiEdge edge,
EdgeStyle<RegulatoryNode,RegulatoryMultiEdge> baseStyle) |
Modifier and Type | Method and Description |
---|---|
EdgeStyle<RegulatoryNode,RegulatoryMultiEdge> |
LRGPatternStyleProvider.getEdgeStyle(RegulatoryMultiEdge edge,
EdgeStyle<RegulatoryNode,RegulatoryMultiEdge> baseStyle) |
Modifier and Type | Method and Description |
---|---|
EdgeStyle |
PathStyleProvider.getEdgeStyle(Edge edge,
EdgeStyle baseStyle) |
Modifier and Type | Method and Description |
---|---|
EdgeStyle |
PathStyleProvider.getEdgeStyle(Edge edge,
EdgeStyle baseStyle) |
Modifier and Type | Method and Description |
---|---|
EdgeStyle<DynamicNode,DynamicEdge> |
STGPathStyleProvider.getEdgeStyle(DynamicEdge edge,
EdgeStyle<DynamicNode,DynamicEdge> baseStyle) |
EdgeStyle<RegulatoryNode,RegulatoryMultiEdge> |
LRGCustomStyleProvider.getEdgeStyle(RegulatoryMultiEdge edge,
EdgeStyle<RegulatoryNode,RegulatoryMultiEdge> baseStyle) |
EdgeStyle<RegulatoryNode,RegulatoryMultiEdge> |
LRGStateStyleProvider.getEdgeStyle(RegulatoryMultiEdge edge,
EdgeStyle<RegulatoryNode,RegulatoryMultiEdge> baseStyle) |
Modifier and Type | Method and Description |
---|---|
EdgeStyle<DynamicNode,DynamicEdge> |
STGPathStyleProvider.getEdgeStyle(DynamicEdge edge,
EdgeStyle<DynamicNode,DynamicEdge> baseStyle) |
EdgeStyle<RegulatoryNode,RegulatoryMultiEdge> |
LRGCustomStyleProvider.getEdgeStyle(RegulatoryMultiEdge edge,
EdgeStyle<RegulatoryNode,RegulatoryMultiEdge> baseStyle) |
EdgeStyle<RegulatoryNode,RegulatoryMultiEdge> |
LRGStateStyleProvider.getEdgeStyle(RegulatoryMultiEdge edge,
EdgeStyle<RegulatoryNode,RegulatoryMultiEdge> baseStyle) |
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