Uses of Interface
org.ginsim.core.graph.GraphModel

Packages that use GraphModel

Package	Description
org.ginsim.core.annotation	Manage annotations: bibliography, Database entries and links.
org.ginsim.core.graph	Define the main Graph interfaces, and a GraphManager to handle graph types
org.ginsim.core.graph.dynamicgraph	State Transition Graphs, representing dynamical behaviours.
org.ginsim.core.graph.hierarchicaltransitiongraph
org.ginsim.core.graph.reducedgraph	Loop-free graphs where each node represents a strongly connected component of the original graph.
org.ginsim.core.graph.regulatorygraph	The regulatory graph is the main graph, it represents the model.
org.ginsim.core.graph.trapspacetree
org.ginsim.core.graph.tree	The Tree graph is a representation of a logical functions, allowing a graphical representation.
org.ginsim.gui.graph.canvas	Custom implementation of the interactive view

Uses of GraphModel in org.ginsim.core.annotation

Methods in org.ginsim.core.annotation with parameters of type GraphModel

Modifier and Type	Method and Description
GraphEventCascade	BiblioList.graphChanged(GraphModel<?,?> g, GraphChangeType type, Object data)

Uses of GraphModel in org.ginsim.core.graph

Classes in org.ginsim.core.graph with type parameters of type GraphModel

Modifier and Type	Interface and Description
interface	GraphListener<G extends GraphModel<?,?>> Listen to graph edit events.

Subinterfaces of GraphModel in org.ginsim.core.graph

Modifier and Type	Interface and Description
interface	Graph<V,E extends Edge<V>> The main graph object in GINsim.

Classes in org.ginsim.core.graph that implement GraphModel

Modifier and Type	Class and Description
class	AbstractDerivedGraph<V,E extends Edge<V>,AG extends Graph<AV,AE>,AV,AE extends Edge<AV>> Base class for graphs which need an associated graph.
class	AbstractGraph<V,E extends Edge<V>> Base class for graphs using a storage backend: it provides generic methods and storage abstraction.

Methods in org.ginsim.core.graph with type parameters of type GraphModel

Modifier and Type	Method and Description
<G extends GraphModel<?,?>> void	GSGraphManager.addGraphListener(G graph, GraphListener<G> listener)
<G extends GraphModel<?,?>> void	GSGraphManager.fireGraphChange(G graph, GraphChangeType type, Object data)
<G extends GraphModel<?,?>> void	GSGraphManager.removeGraphListener(G graph, GraphListener<G> listener)

Uses of GraphModel in org.ginsim.core.graph.dynamicgraph

Subinterfaces of GraphModel in org.ginsim.core.graph.dynamicgraph

Modifier and Type	Interface and Description
interface	DynamicGraph the dynamic (state transition) graph.
interface	TransitionGraph<V,E extends Edge<V>>

Classes in org.ginsim.core.graph.dynamicgraph that implement GraphModel

Modifier and Type	Class and Description
class	DynamicGraphImpl Implementation of dynamical graphs.
class	TransitionGraphImpl<V,E extends Edge<V>>

Uses of GraphModel in org.ginsim.core.graph.hierarchicaltransitiongraph

Subinterfaces of GraphModel in org.ginsim.core.graph.hierarchicaltransitiongraph

Modifier and Type	Interface and Description
interface	HierarchicalTransitionGraph Hierarchical Transition Graphs provide a compact representation of the dynamical behaviour.

Classes in org.ginsim.core.graph.hierarchicaltransitiongraph that implement GraphModel

Modifier and Type	Class and Description
class	HierarchicalTransitionGraphImpl Implementation of the HTG interface

Uses of GraphModel in org.ginsim.core.graph.reducedgraph

Subinterfaces of GraphModel in org.ginsim.core.graph.reducedgraph

Modifier and Type	Interface and Description
interface	ReducedGraph<AG extends Graph<AV,AE>,AV,AE extends Edge<AV>> Graph of the strongly connected components.

Classes in org.ginsim.core.graph.reducedgraph that implement GraphModel

Modifier and Type	Class and Description
class	ReducedGraphImpl<G extends Graph<V,E>,V,E extends Edge<V>> Implementation of the Reduced Graph.

Uses of GraphModel in org.ginsim.core.graph.regulatorygraph

Subinterfaces of GraphModel in org.ginsim.core.graph.regulatorygraph

Modifier and Type	Interface and Description
interface	RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph that implement GraphModel

Modifier and Type	Class and Description
class	RegulatoryGraphImpl Implementation of the RegulatoryGraph interface.

Uses of GraphModel in org.ginsim.core.graph.trapspacetree

Subinterfaces of GraphModel in org.ginsim.core.graph.trapspacetree

Modifier and Type	Interface and Description
interface	TrapSpaceInclusionDiagram Trap-space inclusion diagram provide an over-approximation of the attractor reachability landscape.

Classes in org.ginsim.core.graph.trapspacetree that implement GraphModel

Modifier and Type	Class and Description
class	TrapSpaceTreeImpl

Uses of GraphModel in org.ginsim.core.graph.tree

Subinterfaces of GraphModel in org.ginsim.core.graph.tree

Modifier and Type	Interface and Description
interface	Tree

Classes in org.ginsim.core.graph.tree that implement GraphModel

Modifier and Type	Class and Description
class	TreeImpl

Uses of GraphModel in org.ginsim.gui.graph.canvas

Methods in org.ginsim.gui.graph.canvas with parameters of type GraphModel

Modifier and Type	Method and Description
GraphEventCascade	GraphCanvasRenderer.graphChanged(GraphModel g, GraphChangeType type, Object data)