Package | Description |
---|---|
org.ginsim.core.annotation |
Manage annotations: bibliography, Database entries and links.
|
org.ginsim.core.graph |
Define the main Graph interfaces, and a GraphManager to handle graph types
|
org.ginsim.core.graph.dynamicgraph |
State Transition Graphs, representing dynamical behaviours.
|
org.ginsim.core.graph.hierarchicaltransitiongraph | |
org.ginsim.core.graph.regulatorygraph.namedstates |
Define states of a regulatory graph, which can be named and
used as starting point for simulations.
|
org.ginsim.core.graph.regulatorygraph.perturbation |
Perturbations to modify some parts of a model before analysis.
|
org.ginsim.core.graph.trapspacetree | |
org.ginsim.gui.graph |
Common GUI for all graphs, and definition of hooks for specialised parts.
|
org.ginsim.gui.graph.canvas |
Custom implementation of the interactive view
|
org.ginsim.gui.graph.dynamicgraph |
Specialised GUI for the State Transition Graphs
|
org.ginsim.gui.graph.hierarchicaltransitiongraph |
Specialised GUI for the Hierarchical Transition Graphs
|
org.ginsim.gui.graph.regulatorygraph |
Specialised GUI for the Regulatory graphs
|
org.ginsim.service.tool.avatar.params | |
org.ginsim.service.tool.modelreduction | |
org.ginsim.service.tool.reg2dyn |
Modifier and Type | Method and Description |
---|---|
GraphEventCascade |
BiblioList.graphChanged(GraphModel<?,?> g,
GraphChangeType type,
Object data) |
Modifier and Type | Method and Description |
---|---|
GraphEventCascade |
GraphListener.graphChanged(G g,
GraphChangeType type,
Object data) |
GraphEventCascade |
AbstractDerivedGraph.graphChanged(Graph g,
GraphChangeType type,
Object data) |
Modifier and Type | Method and Description |
---|---|
GraphEventCascade |
DynamicGraphImpl.graphChanged(RegulatoryGraph g,
GraphChangeType type,
Object data) |
Modifier and Type | Method and Description |
---|---|
GraphEventCascade |
HierarchicalTransitionGraphImpl.graphChanged(RegulatoryGraph g,
GraphChangeType type,
Object data) |
Modifier and Type | Method and Description |
---|---|
GraphEventCascade |
NamedStatesHandler.graphChanged(RegulatoryGraph g,
GraphChangeType type,
Object data) |
Modifier and Type | Method and Description |
---|---|
GraphEventCascade |
ListOfPerturbations.graphChanged(RegulatoryGraph g,
GraphChangeType type,
Object data) |
Modifier and Type | Method and Description |
---|---|
GraphEventCascade |
TrapSpaceTreeImpl.graphChanged(RegulatoryGraph g,
GraphChangeType type,
Object data) |
Modifier and Type | Method and Description |
---|---|
GraphEventCascade |
BaseGraphGUI.graphChanged(G g,
GraphChangeType type,
Object data) |
Modifier and Type | Method and Description |
---|---|
GraphEventCascade |
GraphCanvasRenderer.graphChanged(GraphModel g,
GraphChangeType type,
Object data) |
Modifier and Type | Method and Description |
---|---|
GraphEventCascade |
StateTransitionGraphEditor.graphChanged(DynamicGraph g,
GraphChangeType type,
Object data) |
Modifier and Type | Method and Description |
---|---|
GraphEventCascade |
HierarchicalGraphEditor.graphChanged(HierarchicalTransitionGraph g,
GraphChangeType type,
Object data) |
Modifier and Type | Method and Description |
---|---|
GraphEventCascade |
RegulatoryGraphEditor.graphChanged(RegulatoryGraph g,
GraphChangeType type,
Object data) |
Modifier and Type | Method and Description |
---|---|
GraphEventCascade |
AvatarParameterList.graphChanged(RegulatoryGraph g,
GraphChangeType type,
Object data)
GRAPH CHANGES ****
|
Modifier and Type | Method and Description |
---|---|
GraphEventCascade |
ListOfReductionConfigs.graphChanged(RegulatoryGraph g,
GraphChangeType type,
Object data) |
Modifier and Type | Method and Description |
---|---|
GraphEventCascade |
SimulationParameterList.graphChanged(RegulatoryGraph g,
GraphChangeType type,
Object data) |
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