Uses of Class
org.ginsim.core.annotation.Annotation

Packages that use Annotation

Package	Description
org.ginsim.core.annotation	Manage annotations: bibliography, Database entries and links.
org.ginsim.core.graph	Define the main Graph interfaces, and a GraphManager to handle graph types
org.ginsim.core.graph.regulatorygraph	The regulatory graph is the main graph, it represents the model.
org.ginsim.gui.annotation	Shared GUI to edit annotations
org.ginsim.service.format.sbml
org.ginsim.service.tool.graphcomparator

Uses of Annotation in org.ginsim.core.annotation

Methods in org.ginsim.core.annotation with parameters of type Annotation

Modifier and Type	Method and Description
void	Annotation.copyFrom(Annotation other)

Uses of Annotation in org.ginsim.core.graph

Fields in org.ginsim.core.graph declared as Annotation

Modifier and Type	Field and Description
protected Annotation	AbstractGraph.graphAnnotation

Methods in org.ginsim.core.graph that return Annotation

Modifier and Type	Method and Description
Annotation	GraphModel.getAnnotation() Give access to the annotation associated with this graph.
Annotation	AbstractGraph.getAnnotation() Give access to the annotation associated with this graph.

Uses of Annotation in org.ginsim.core.graph.regulatorygraph

Methods in org.ginsim.core.graph.regulatorygraph that return Annotation

Modifier and Type	Method and Description
Annotation	RegulatoryMultiEdge.getAnnotation()
Annotation	RegulatoryNode.getAnnotation() get notes on this gene.

Methods in org.ginsim.core.graph.regulatorygraph with parameters of type Annotation

Modifier and Type	Method and Description
void	RegulatoryNode.setGsa(Annotation annotation)

Uses of Annotation in org.ginsim.gui.annotation

Methods in org.ginsim.gui.annotation with parameters of type Annotation

Modifier and Type	Method and Description
void	AnnotationPanel.setAnnotation(Annotation annotation)

Uses of Annotation in org.ginsim.service.format.sbml

Methods in org.ginsim.service.format.sbml with parameters of type Annotation

Modifier and Type	Method and Description
void	SBMLqualService.exportAnnotation(org.sbml.jsbml.SBase elt, Annotation gsnote)
void	SBMLqualService.importAnnotation(RegulatoryGraph lrg, org.sbml.jsbml.SBase elt, Annotation gsnote)

Uses of Annotation in org.ginsim.service.tool.graphcomparator

Methods in org.ginsim.service.tool.graphcomparator with parameters of type Annotation

Modifier and Type	Method and Description
protected void	RegulatoryGraphComparator.addtoannotation(Annotation a, Annotation a1)