Uses of Interface
org.ginsim.common.xml.XMLize

Packages that use XMLize

Package	Description
org.ginsim.core.annotation	Manage annotations: bibliography, Database entries and links.
org.ginsim.core.graph.regulatorygraph.logicalfunction	Logical functions associated to nodes of the regulatory graph define their dynamical behaviour.
org.ginsim.service.tool.avatar.params
org.ginsim.service.tool.modelreduction
org.ginsim.service.tool.reg2dyn
org.ginsim.service.tool.reg2dyn.priorityclass
org.ginsim.service.tool.reg2dyn.updater

Uses of XMLize in org.ginsim.core.annotation

Classes in org.ginsim.core.annotation that implement XMLize

Modifier and Type	Class and Description
class	Annotation Generic annotation: some free text and a list of urls.
class	BiblioList Bibliography: list of bibliographic entries.

Uses of XMLize in org.ginsim.core.graph.regulatorygraph.logicalfunction

Classes in org.ginsim.core.graph.regulatorygraph.logicalfunction that implement XMLize

Modifier and Type	Class and Description
class	LogicalParameter the Class in which we store biological data for logical parameters (in the vertex)

Uses of XMLize in org.ginsim.service.tool.avatar.params

Classes in org.ginsim.service.tool.avatar.params that implement XMLize

Modifier and Type	Class and Description
class	AvatarParameters Serializable context of a simulation (parameters, oracles and initial states)

Uses of XMLize in org.ginsim.service.tool.modelreduction

Classes in org.ginsim.service.tool.modelreduction that implement XMLize

Modifier and Type	Class and Description
class	ReductionConfig

Uses of XMLize in org.ginsim.service.tool.reg2dyn

Classes in org.ginsim.service.tool.reg2dyn that implement XMLize

Modifier and Type	Class and Description
class	SimulationParameters remember, save and restore a simulation parameter.

Uses of XMLize in org.ginsim.service.tool.reg2dyn.priorityclass

Classes in org.ginsim.service.tool.reg2dyn.priorityclass that implement XMLize

Modifier and Type	Class and Description
class	PrioritySetDefinition Definition of a set of priority classes: store a list of classes and assign all nodes to one of them.

Uses of XMLize in org.ginsim.service.tool.reg2dyn.updater

Subinterfaces of XMLize in org.ginsim.service.tool.reg2dyn.updater

Modifier and Type	Interface and Description
interface	UpdaterDefinition

Classes in org.ginsim.service.tool.reg2dyn.updater that implement XMLize

Modifier and Type	Class and Description
class	UpdaterDefinitionAsynchronous
class	UpdaterDefinitionComplete
class	UpdaterDefinitionSequential
class	UpdaterDefinitionSynchronous