Package | Description |
---|---|
org.ginsim.core.graph |
Define the main Graph interfaces, and a GraphManager to handle graph types
|
org.ginsim.core.graph.dynamicgraph |
State Transition Graphs, representing dynamical behaviours.
|
org.ginsim.core.graph.hierarchicaltransitiongraph | |
org.ginsim.core.graph.regulatorygraph |
The regulatory graph is the main graph, it represents the model.
|
org.ginsim.core.graph.trapspacetree | |
org.ginsim.core.graph.tree |
The Tree graph is a representation of a logical functions, allowing a graphical representation.
|
Modifier and Type | Class and Description |
---|---|
class |
Edge<V>
Base class for all edges: store the source and target nodes.
|
Modifier and Type | Class and Description |
---|---|
class |
DynamicEdge
Edges in a state transition graph.
|
Modifier and Type | Class and Description |
---|---|
class |
DecisionOnEdge
Store a label that represent the genes that are updated between two states source, and target.
|
Modifier and Type | Class and Description |
---|---|
class |
RegulatoryMultiEdge
Edges of the regulatory graph: provide a list of interactions.
|
class |
RegulatoryNode
A node in the Regulatory graph, representing a regulatory component.
|
Modifier and Type | Class and Description |
---|---|
class |
TrapSpaceInclusion |
Modifier and Type | Class and Description |
---|---|
class |
TreeEdge |
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