Package | Description |
---|---|
org.ginsim.service.tool.avatar.domain | |
org.ginsim.service.tool.avatar.simulation | |
org.ginsim.service.tool.avatar.utils |
Modifier and Type | Method and Description |
---|---|
StateSet |
StateSet.getExitStateSet()
Returns the states accessible from the state-set
|
Modifier and Type | Method and Description |
---|---|
void |
StateSet.addAll(StateSet set)
Adds a set of states to the state-set
|
boolean |
StateSet.hasOverlapping(StateSet set)
Checks whether two state-sets share states
|
void |
Result.increment(StateSet s)
Increments the number of occurrences for a complex attractor (assumes the
results contain the attractor)
|
void |
StateSet.setExitStates(StateSet exit)
Stores the set of reachable states from the current state-set
|
Constructor and Description |
---|
StateSet(StateSet _states)
Clones a given state-set
|
Modifier and Type | Method and Description |
---|---|
StateSet |
AvatarSimulation.calculateComplexAttractor(StateSet Ct,
List<StateSet> temporaryTransients,
PriorityQueue<StateSet> savedTransients)
Calculates a complex attractor based on the knowledge of previous
incarnations
|
static StateSet |
Reachable.computeReachableStates(StatefulLogicalModel model)
Method to find all the reachable states from a given portion of the state space
|
static StateSet |
MDDUtils.toStateSet(List<byte[]> oracle,
List<org.colomoto.biolqm.NodeInfo> nodes)
Maps an oracle (set of state patterns) into a set of specific states
|
Modifier and Type | Method and Description |
---|---|
StateSet |
AvatarSimulation.calculateComplexAttractor(StateSet Ct,
List<StateSet> temporaryTransients,
PriorityQueue<StateSet> savedTransients)
Calculates a complex attractor based on the knowledge of previous
incarnations
|
void |
AvatarSimulation.extendCycle(State v,
StateSet cycle,
StateSet exits,
StateSet newstates,
int i,
int tau,
Map<String,Integer> time,
int originalTime)
Method for extending cycles before rewiring
|
static ReducedGraph |
SimulationUtils.getGraphFromAttractor(ReducedGraph graph,
StateSet attractor,
org.colomoto.biolqm.LogicalModel model)
Generates a drawable reduced graph from a complex attractor
|
void |
AvatarSimulation.rewriteGraph(StateSet cycle,
StateSet out,
FinalPaths pi)
Method for rewiring a cycle
|
Modifier and Type | Method and Description |
---|---|
StateSet |
AvatarSimulation.calculateComplexAttractor(StateSet Ct,
List<StateSet> temporaryTransients,
PriorityQueue<StateSet> savedTransients)
Calculates a complex attractor based on the knowledge of previous
incarnations
|
StateSet |
AvatarSimulation.calculateComplexAttractor(StateSet Ct,
List<StateSet> temporaryTransients,
PriorityQueue<StateSet> savedTransients)
Calculates a complex attractor based on the knowledge of previous
incarnations
|
Modifier and Type | Method and Description |
---|---|
int |
StateSetComparator.compare(StateSet x,
StateSet y) |
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