Uses of Package
org.ginsim.core.graph.regulatorygraph

Packages that use org.ginsim.core.graph.regulatorygraph

Package	Description
org.ginsim	The base package for GINsim, with launcher classes.
org.ginsim.core.graph	Define the main Graph interfaces, and a GraphManager to handle graph types
org.ginsim.core.graph.dynamicgraph	State Transition Graphs, representing dynamical behaviours.
org.ginsim.core.graph.hierarchicaltransitiongraph
org.ginsim.core.graph.regulatorygraph	The regulatory graph is the main graph, it represents the model.
org.ginsim.core.graph.regulatorygraph.logicalfunction	Logical functions associated to nodes of the regulatory graph define their dynamical behaviour.
org.ginsim.core.graph.regulatorygraph.logicalfunction.graphictree
org.ginsim.core.graph.regulatorygraph.logicalfunction.param2function
org.ginsim.core.graph.regulatorygraph.namedstates	Define states of a regulatory graph, which can be named and used as starting point for simulations.
org.ginsim.core.graph.regulatorygraph.perturbation	Perturbations to modify some parts of a model before analysis.
org.ginsim.core.graph.trapspacetree
org.ginsim.core.graph.tree	The Tree graph is a representation of a logical functions, allowing a graphical representation.
org.ginsim.core.service	Manage Services to extend the core features.
org.ginsim.gui	Definition of the GUIManager: provide access to all opened windows
org.ginsim.gui.graph.dynamicgraph	Specialised GUI for the State Transition Graphs
org.ginsim.gui.graph.regulatorygraph	Specialised GUI for the Regulatory graphs
org.ginsim.gui.graph.regulatorygraph.initialstate	GUI for the definition and selection of states.
org.ginsim.gui.graph.regulatorygraph.logicalfunction	GUI to view and edit logical functions associated to Regulatory Nodes
org.ginsim.gui.graph.regulatorygraph.perturbation	GUI for the definition and selection of perturbations applied to a Regulatory Graph
org.ginsim.gui.service	API for GUI services, and a manager to load them and integrate them in the shell.
org.ginsim.gui.utils.data	Widgets and panels to handle datasets: mostly list edition/selection panels.
org.ginsim.gui.utils.dialog.stackdialog	Definition of StackDialog: a run dialog where the main panel can be changed.
org.ginsim.service.export.cadp
org.ginsim.service.export.documentation
org.ginsim.service.export.image
org.ginsim.service.export.prism
org.ginsim.service.export.reggraph
org.ginsim.service.export.sat
org.ginsim.service.export.struct
org.ginsim.service.format.ginml
org.ginsim.service.format.sbml
org.ginsim.service.layout
org.ginsim.service.tool.avatar.params
org.ginsim.service.tool.circuit
org.ginsim.service.tool.composition
org.ginsim.service.tool.graphcomparator
org.ginsim.service.tool.interactionanalysis
org.ginsim.service.tool.localgraph
org.ginsim.service.tool.modelbooleanizer
org.ginsim.service.tool.modelreduction
org.ginsim.service.tool.reg2dyn
org.ginsim.service.tool.reg2dyn.priorityclass
org.ginsim.service.tool.stableregions
org.ginsim.service.tool.stablestates
org.ginsim.servicegui.export.cadp
org.ginsim.servicegui.export.documentation
org.ginsim.servicegui.export.nusmv
org.ginsim.servicegui.export.petrinet
org.ginsim.servicegui.format.sbml
org.ginsim.servicegui.tool.avatar
org.ginsim.servicegui.tool.avatar.parameters
org.ginsim.servicegui.tool.circuit	search circuits in the regulatory graph.
org.ginsim.servicegui.tool.composition
org.ginsim.servicegui.tool.decisionanalysis
org.ginsim.servicegui.tool.interactionanalysis
org.ginsim.servicegui.tool.lrgcolorizer
org.ginsim.servicegui.tool.modelreduction
org.ginsim.servicegui.tool.omddViz
org.ginsim.servicegui.tool.reg2dyn	find the state transition graph from the regulatory one
org.ginsim.servicegui.tool.reg2dyn.limitedSimulation
org.ginsim.servicegui.tool.reg2dyn.priorityclass
org.ginsim.servicegui.tool.regulatorygraphanimation	animate the regulatory graph (by simply changing nodes and edge's colors) according to a path/state in the state transition graph.
org.ginsim.servicegui.tool.stablestates
org.ginsim.servicegui.tool.trapspace

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.core.graph

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.core.graph.dynamicgraph

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.core.graph.hierarchicaltransitiongraph

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.core.graph.regulatorygraph

Class and Description
ActivityLevel
NodeOrderer Order the components of a regulatory graph.
RegulatoryEdge An interactions between the nodes of a regulatory graph..
RegulatoryEdgeSign Possible signs for interactions.
RegulatoryGraph The regulatory graph
RegulatoryGraphFactory Factory for regulatory graphs.
RegulatoryMultiEdge Edges of the regulatory graph: provide a list of interactions.
RegulatoryNode A node in the Regulatory graph, representing a regulatory component.

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.core.graph.regulatorygraph.logicalfunction

Class and Description
RegulatoryEdge An interactions between the nodes of a regulatory graph..
RegulatoryGraph The regulatory graph
RegulatoryMultiEdge Edges of the regulatory graph: provide a list of interactions.
RegulatoryNode A node in the Regulatory graph, representing a regulatory component.

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.core.graph.regulatorygraph.logicalfunction.graphictree

Class and Description
RegulatoryGraph The regulatory graph
RegulatoryMultiEdge Edges of the regulatory graph: provide a list of interactions.
RegulatoryNode A node in the Regulatory graph, representing a regulatory component.

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.core.graph.regulatorygraph.logicalfunction.param2function

Class and Description
RegulatoryGraph The regulatory graph
RegulatoryMultiEdge Edges of the regulatory graph: provide a list of interactions.
RegulatoryNode A node in the Regulatory graph, representing a regulatory component.

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.core.graph.regulatorygraph.namedstates

Class and Description
RegulatoryGraph The regulatory graph
RegulatoryNode A node in the Regulatory graph, representing a regulatory component.

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.core.graph.regulatorygraph.perturbation

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.core.graph.trapspacetree

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.core.graph.tree

Class and Description
RegulatoryGraph The regulatory graph
RegulatoryNode A node in the Regulatory graph, representing a regulatory component.

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.core.service

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.gui

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.gui.graph.dynamicgraph

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.gui.graph.regulatorygraph

Class and Description
RegulatoryEdge An interactions between the nodes of a regulatory graph..
RegulatoryGraph The regulatory graph
RegulatoryMultiEdge Edges of the regulatory graph: provide a list of interactions.
RegulatoryNode A node in the Regulatory graph, representing a regulatory component.

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.gui.graph.regulatorygraph.initialstate

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.gui.graph.regulatorygraph.logicalfunction

Class and Description
RegulatoryGraph The regulatory graph
RegulatoryNode A node in the Regulatory graph, representing a regulatory component.

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.gui.graph.regulatorygraph.perturbation

Class and Description
RegulatoryGraph The regulatory graph
RegulatoryMultiEdge Edges of the regulatory graph: provide a list of interactions.
RegulatoryNode A node in the Regulatory graph, representing a regulatory component.

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.gui.service

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.gui.utils.data

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.gui.utils.dialog.stackdialog

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.service.export.cadp

Class and Description
RegulatoryGraph The regulatory graph
RegulatoryNode A node in the Regulatory graph, representing a regulatory component.

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.service.export.documentation

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.service.export.image

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.service.export.prism

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.service.export.reggraph

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.service.export.sat

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.service.export.struct

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.service.format.ginml

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.service.format.sbml

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.service.layout

Class and Description
RegulatoryNode A node in the Regulatory graph, representing a regulatory component.

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.service.tool.avatar.params

Class and Description
RegulatoryGraph The regulatory graph
RegulatoryMultiEdge Edges of the regulatory graph: provide a list of interactions.
RegulatoryNode A node in the Regulatory graph, representing a regulatory component.

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.service.tool.circuit

Class and Description
MDDContext
RegulatoryEdge An interactions between the nodes of a regulatory graph..
RegulatoryGraph The regulatory graph
RegulatoryMultiEdge Edges of the regulatory graph: provide a list of interactions.
RegulatoryNode A node in the Regulatory graph, representing a regulatory component.

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.service.tool.composition

Class and Description
RegulatoryGraph The regulatory graph
RegulatoryNode A node in the Regulatory graph, representing a regulatory component.

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.service.tool.graphcomparator

Class and Description
RegulatoryGraph The regulatory graph
RegulatoryMultiEdge Edges of the regulatory graph: provide a list of interactions.
RegulatoryNode A node in the Regulatory graph, representing a regulatory component.

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.service.tool.interactionanalysis

Class and Description
RegulatoryGraph The regulatory graph
RegulatoryNode A node in the Regulatory graph, representing a regulatory component.

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.service.tool.localgraph

Class and Description
ActivityLevel
RegulatoryGraph The regulatory graph
RegulatoryMultiEdge Edges of the regulatory graph: provide a list of interactions.
RegulatoryNode A node in the Regulatory graph, representing a regulatory component.

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.service.tool.modelbooleanizer

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.service.tool.modelreduction

Class and Description
RegulatoryGraph The regulatory graph
RegulatoryMultiEdge Edges of the regulatory graph: provide a list of interactions.
RegulatoryNode A node in the Regulatory graph, representing a regulatory component.

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.service.tool.reg2dyn

Class and Description
RegulatoryGraph The regulatory graph
RegulatoryMultiEdge Edges of the regulatory graph: provide a list of interactions.
RegulatoryNode A node in the Regulatory graph, representing a regulatory component.

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.service.tool.reg2dyn.priorityclass

Class and Description
RegulatoryGraph The regulatory graph
RegulatoryNode A node in the Regulatory graph, representing a regulatory component.

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.service.tool.stableregions

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.service.tool.stablestates

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.servicegui.export.cadp

Class and Description
RegulatoryGraph The regulatory graph
RegulatoryNode A node in the Regulatory graph, representing a regulatory component.

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.servicegui.export.documentation

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.servicegui.export.nusmv

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.servicegui.export.petrinet

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.servicegui.format.sbml

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.servicegui.tool.avatar

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.servicegui.tool.avatar.parameters

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.servicegui.tool.circuit

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.servicegui.tool.composition

Class and Description
RegulatoryGraph The regulatory graph
RegulatoryNode A node in the Regulatory graph, representing a regulatory component.

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.servicegui.tool.decisionanalysis

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.servicegui.tool.interactionanalysis

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.servicegui.tool.lrgcolorizer

Class and Description
RegulatoryGraph The regulatory graph
RegulatoryMultiEdge Edges of the regulatory graph: provide a list of interactions.
RegulatoryNode A node in the Regulatory graph, representing a regulatory component.

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.servicegui.tool.modelreduction

Class and Description
RegulatoryGraph The regulatory graph
RegulatoryMultiEdge Edges of the regulatory graph: provide a list of interactions.
RegulatoryNode A node in the Regulatory graph, representing a regulatory component.

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.servicegui.tool.omddViz

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.servicegui.tool.reg2dyn

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.servicegui.tool.reg2dyn.limitedSimulation

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.servicegui.tool.reg2dyn.priorityclass

Class and Description
RegulatoryNode A node in the Regulatory graph, representing a regulatory component.

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.servicegui.tool.regulatorygraphanimation

Class and Description
RegulatoryGraph The regulatory graph
RegulatoryMultiEdge Edges of the regulatory graph: provide a list of interactions.
RegulatoryNode A node in the Regulatory graph, representing a regulatory component.

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.servicegui.tool.stablestates

Class and Description
RegulatoryGraph The regulatory graph

Classes in org.ginsim.core.graph.regulatorygraph used by org.ginsim.servicegui.tool.trapspace

Class and Description
RegulatoryGraph The regulatory graph