Package | Description |
---|---|
org.ginsim.core.annotation |
Manage annotations: bibliography, Database entries and links.
|
org.ginsim.core.graph.objectassociation |
Handling objects associated to Graphs.
|
org.ginsim.core.graph.regulatorygraph.namedstates |
Define states of a regulatory graph, which can be named and
used as starting point for simulations.
|
org.ginsim.core.graph.regulatorygraph.perturbation |
Perturbations to modify some parts of a model before analysis.
|
org.ginsim.service.tool.avatar.params | |
org.ginsim.service.tool.modelreduction | |
org.ginsim.service.tool.reg2dyn | |
org.ginsim.service.tool.reg2dyn.limitedsimulation |
Modifier and Type | Class and Description |
---|---|
class |
BiblioManager
Associated data manager to save and restore bibliographies.
|
Modifier and Type | Class and Description |
---|---|
class |
BasicGraphAssociatedManager<T>
Base class to create managers for associated objects.
|
Modifier and Type | Method and Description |
---|---|
GraphAssociatedObjectManager |
ObjectAssociationManager.getObjectManager(Class graph_class,
String key)
Give access to the Object manager in charge of the given object
|
GraphAssociatedObjectManager |
ObjectAssociationManager.getObjectManager(String key)
Give access to the Object manager in charge of the given object
|
Modifier and Type | Method and Description |
---|---|
Collection<Map.Entry<Class,List<GraphAssociatedObjectManager>>> |
ObjectAssociationManager.getManagedClasses()
Give access to the list of classes for which object managers are registered
|
List<GraphAssociatedObjectManager> |
ObjectAssociationManager.getObjectManagerList()
Give access to the list of registered object managers that are not associated with a graph class
|
List<GraphAssociatedObjectManager> |
ObjectAssociationManager.getObjectManagerList(Class graph_class)
Give access to the list of registered object managers for the given graph class
|
Modifier and Type | Class and Description |
---|---|
class |
NamedStatesManager
Manager for the named states associated data.
|
Modifier and Type | Class and Description |
---|---|
class |
PerturbationManager
Save/open perturbation definitions along with the model.
|
Modifier and Type | Class and Description |
---|---|
class |
AvatarParametersManager
Saves and opens the context of a simulation
|
Modifier and Type | Class and Description |
---|---|
class |
ReductionConfigManager
Save/open simulation parameters along with the model.
|
Modifier and Type | Class and Description |
---|---|
class |
SimulationParametersManager
Save/open simulation parameters along with the model.
|
Modifier and Type | Class and Description |
---|---|
class |
StatesToHierarchicalMappingManager
An GraphAssociatedObjectManager providing an HashMap
|
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